Evidence map›Paper›PMID 28185042›Full record

ArticleGenetica2017

Phylogenomic relationship of feijoa (Acca sellowiana (O.Berg) Burret) with other Myrtaceae based on complete chloroplast genome sequences.

Lilian de Oliveira Machado, Leila do Nascimento Vieira, Valdir Marcos Stefenon, Fábio de Oliveira Pedrosa, Emanuel Maltempi de Souza, Miguel Pedro Guerra, Rubens Onofre Nodari

Abstract read
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In one paragraph

Article in Genetica, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. The complete sequence of chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024
    Article
  2. The complete chloroplast genome of a fast-growing treeMitochondrial DNA. Part B, Resources · 2023
    Article
  3. Article
  4. Article
  5. Construction of a High-Density Genetic Map ofFrontiers in plant science · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Comparative Chloroplast Genome Analyses of Species inInternational journal of molecular sciences · 2018
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lilian de Oliveira MachadoLaboratório de Fisiologia do Desenvolvimento e Genética Vegetal, Programa de Pós-graduação em Recursos Genéticos Vegetais, Universidade Federal de Santa Catarina, Rodovia Admar Gonzaga, 1346, 88040-900, Florianópolis, Santa Catarina, Brazil.
Leila do Nascimento VieiraLaboratório de Fisiologia do Desenvolvimento e Genética Vegetal, Programa de Pós-graduação em Recursos Genéticos Vegetais, Universidade Federal de Santa Catarina, Rodovia Admar Gonzaga, 1346, 88040-900, Florianópolis, Santa Catarina, Brazil.
Valdir Marcos StefenonNúcleo de Genômica e Ecologia Molecular, Programa de Pós-graduação em Ciências Biológicas, Universidade Federal do Pampa, Av. Antônio Trilha 1847, 97300-000, São Clemente, São Gabriel, Rio Grande Do Sul, Brazil.
Fábio de Oliveira PedrosaDepartamento de Bioquímica e Biologia Molecular, Núcleo de Fixação Biológica de Nitrogênio, Universidade Federal do Paraná, Rua Coronel Francisco H. dos Santos s/n, 81531-980, Curitiba, Paraná, Brazil.
Emanuel Maltempi de SouzaDepartamento de Bioquímica e Biologia Molecular, Núcleo de Fixação Biológica de Nitrogênio, Universidade Federal do Paraná, Rua Coronel Francisco H. dos Santos s/n, 81531-980, Curitiba, Paraná, Brazil.
Miguel Pedro GuerraLaboratório de Fisiologia do Desenvolvimento e Genética Vegetal, Programa de Pós-graduação em Recursos Genéticos Vegetais, Universidade Federal de Santa Catarina, Rodovia Admar Gonzaga, 1346, 88040-900, Florianópolis, Santa Catarina, Brazil.
Rubens Onofre NodariLaboratório de Fisiologia do Desenvolvimento e Genética Vegetal, Programa de Pós-graduação em Recursos Genéticos Vegetais, Universidade Federal de Santa Catarina, Rodovia Admar Gonzaga, 1346, 88040-900, Florianópolis, Santa Catarina, Brazil. rubens.nodari@ufsc.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Given their distribution, importance, and richness, Myrtaceae species comprise a model system for studying the evolution of tropical plant diversity. In addition, chloroplast (cp) genome sequencing is an efficient tool for phylogenetic relationship studies. Feijoa [Acca sellowiana (O. Berg) Burret; CN: pineapple-guava] is a Myrtaceae species that occurs naturally in southern Brazil and northern Uruguay. Feijoa is known for its exquisite perfume and flavorful fruits, pharmacological properties, ornamental value and increasing economic relevance. In the present work, we reported the complete cp genome of feijoa. The feijoa cp genome is a circular molecule of 159,370 bp with a quadripartite structure containing two single copy regions, a Large Single Copy region (LSC 88,028 bp) and a Small Single Copy region (SSC 18,598 bp) separated by Inverted Repeat regions (IRs 26,372 bp). The genome structure, gene order, GC content and codon usage are similar to those of typical angiosperm cp genomes. When compared to other cp genome sequences of Myrtaceae, feijoa showed closest relationship with pitanga (Eugenia uniflora L.). Furthermore, a comparison of pitanga synonymous (Ks) and nonsynonymous (Ka) substitution rates revealed extremely low values. Maximum Likelihood and Bayesian Inference analyses produced phylogenomic trees identical in topology. These trees supported monophyly of three Myrtoideae clades.

Indexed as

Base CompositionBayes TheoremBrazilCodonDNA, CircularFeijoaGene OrderGenes, ChloroplastGenome, ChloroplastMarkov ChainsMonte Carlo MethodMutationMyrtaceaePhylogenyPolymorphism, Single NucleotideSequence Analysis, DNACodonDNA, CircularFeijoaMyrtaceaeNext-generation sequencingPhylogenomicsPlastid

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.