Evidence map›Paper›PMID 28182654›Full record

ArticlePLoS genetics2017

ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans.

Karolina M Andralojc, Anne C Campbell, Ashley L Kelly, Markus Terrey, Paige C Tanner, Ian M Gans, Michael J Senter-Zapata, Eraj S Khokhar, Dustin L Updike

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Germline stem cells in human.Signal transduction and targeted therapy · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. G3 (Bethesda, Md.) · 2020
    Article
  10. mRNA localization is linked to translation regulation in theDevelopment (Cambridge, England) · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Development (Cambridge, England) · 2019
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Karolina M AndralojcThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.
Anne C CampbellThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0003-2086-0246
Ashley L KellyThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.
Markus TerreyThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0002-7359-4810
Paige C TannerThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.
Ian M GansThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0003-3827-6494
Michael J Senter-ZapataThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0001-8099-3935
Eraj S KhokharThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0002-0713-7099
Dustin L UpdikeThe Mount Desert Island Biological Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0002-1745-3669
Mount Desert Island Biological Laboratory · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Dustin Lynn Updike · 2012 to 2026
$60.0M
Understanding the role of thyroid hormone signaling during axolotl limb regenerationP20GM104318 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI DRUMMOND, IAIN A. · 2013 to 2023
$23.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
The function of germ granules in maintaining pluripotency in the C. elegans germlineR01GM113933 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI UPDIKE, DUSTIN LYNN · 2015 to 2023
$3.1M
NIGMS NIH HHS P20 GM103423NIGMS NIH HHS P20 GM104318NIGMS NIH HHS R01 GM113933NIH HHS P40 OD010440
6 · The paper itself

Abstract

Germ cells contain non-membrane bound cytoplasmic organelles that help maintain germline integrity. In C. elegans they are called P granules; without them, the germline undergoes partial masculinization and aberrant differentiation. One key P-granule component is the Argonaute CSR-1, a small-RNA binding protein that antagonizes accumulation of sperm-specific transcripts in developing oocytes and fine-tunes expression of proteins critical to early embryogenesis. Loss of CSR-1 complex components results in a very specific, enlarged P-granule phenotype. In a forward screen to identify mutants with abnormal P granules, ten alleles were recovered with a csr-1 P-granule phenotype, eight of which contain mutations in known components of the CSR-1 complex (csr-1, ego-1, ekl-1, and drh-3). The remaining two alleles are in a novel gene now called elli-1 (enlarged germline granules). ELLI-1 is first expressed in primordial germ cells during mid-embryogenesis, and continues to be expressed in the adult germline. While ELLI-1 forms cytoplasmic aggregates, they occasionally dock, but do not co-localize with P granules. Instead, the majority of ELLI-1 aggregates accumulate in the shared germline cytoplasm. In elli-1 mutants, several genes that promote RNAi and P-granule accumulation are upregulated, and embryonic lethality, sterility, and RNAi resistance in a hypomorphic drh-3 allele is enhanced, suggesting that ELLI-1 functions with CSR-1 to modulate RNAi activity, P-granule accumulation, and post-transcriptional expression in the germline.

Indexed as

RNA InterferenceAllelesAnimalsAnimals, Genetically ModifiedBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCytoplasmic GranulesDEAD-box RNA HelicasesGene Expression ProfilingGene Expression Regulation, DevelopmentalGerm CellsGreen Fluorescent ProteinsImmunohistochemistryIn Situ Hybridization, FluorescenceMicroscopy, FluorescenceCaenorhabditis elegans ProteinsCSR-1 protein, C elegansDEAD-box RNA HelicasesDrh-3 protein, C elegansEGO-1 protein, C elegansEkl protein, c elegansELLI-1 protein, C elegansGreen Fluorescent ProteinsPGL-1 protein, C elegansRNA-Binding ProteinsRNA-Dependent RNA PolymeraseTranscription Factors, General

Identifiers

PMID28182654
PMCPMC5325599
OpenAlexW2586812692

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.