Evidence map›Paper›PMID 28182563›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

A high-throughput small molecule screen identifies synergism between DNA methylation and Aurora kinase pathways for X reactivation.

Derek Lessing, Thomas O Dial, Chunyao Wei, Bernhard Payer, Lieselot L G Carrette, Barry Kesner, Attila Szanto, Ajit Jadhav, David J Maloney, Anton Simeonov and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Multiplex epigenome editing ofScience translational medicine · 2023
    Article
  6. Review
  7. A lifelong duty: how Xist maintains the inactive X chromosome.Current opinion in genetics & development · 2022
    Review
  8. The Molecular and Nuclear Dynamics of X-Chromosome Inactivation.Cold Spring Harbor perspectives in biology · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. The use of DNA methylation clock in aging research.Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Pharmacological reactivation of inactive X-linkedProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Derek LessingHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Thomas O DialHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Chunyao WeiHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Bernhard PayerCentre for Genomic Regulation, 08003 Barcelona, Spain.
Lieselot L G CarretteHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Barry KesnerHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Attila SzantoHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114.
Ajit JadhavDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850.
David J MaloneyDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850.
Anton SimeonovDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850.
Jimmy TheriaultBroad Institute, Cambridge, MA 02142.
Thomas HasakaBroad Institute, Cambridge, MA 02142.
Antonio BedalovClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Marisa S BartolomeiDepartment of Cell and Developmental Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104.
Jeannie T LeeHoward Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114; lee@molbio.mgh.harvard.edu.
Massachusetts General Hospital · USHoward Hughes Medical Institute · USBroad Institute · USNational Institutes of Health · USCentre for Genomic Regulation · ESFred Hutch Cancer Center · USNational Center for Advancing Translational Sciences · USUniversity of Pennsylvania · US

Funding

User Driven ProjectU54HG005032 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCHREIBER, STUART L · 2008 to 2013
$88.1M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Trevor M Penning · 2006 to 2026
$35.3M
The RNA-activation platform to treat X-linked disease in a locus-specific manner.R01DA036895 · NIDA · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2013 to 2017
$1.7M
Translational Immunology Core's FACSAria Cell SorterS10RR023440 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI PREFFER, FREDERIC IRA · 2008 to 2008
$500k
A high throughput screen for X-reactivation and reprogramming by small moleculesR03MH097478 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2012 to 2013
$86k
NCRR NIH HHS S10 RR023440NHGRI NIH HHS U54 HG005032NIDA NIH HHS R01 DA036895NIEHS NIH HHS P30 ES013508NIMH NIH HHS R03 MH097478
6 · The paper itself

Abstract

X-chromosome inactivation is a mechanism of dosage compensation in which one of the two X chromosomes in female mammals is transcriptionally silenced. Once established, silencing of the inactive X (Xi) is robust and difficult to reverse pharmacologically. However, the Xi is a reservoir of >1,000 functional genes that could be potentially tapped to treat X-linked disease. To identify compounds that could reactivate the Xi, here we screened ∼367,000 small molecules in an automated high-content screen using an Xi-linked GFP reporter in mouse fibroblasts. Given the robust nature of silencing, we sensitized the screen by "priming" cells with the DNA methyltransferase inhibitor, 5-aza-2'-deoxycytidine (5azadC). Compounds that elicited GFP activity include VX680, MLN8237, and 5azadC, which are known to target the Aurora kinase and DNA methylation pathways. We demonstrate that the combinations of VX680 and 5azadC, as well as MLN8237 and 5azadC, synergistically up-regulate genes on the Xi. Thus, our work identifies a synergism between the DNA methylation and Aurora kinase pathways as being one of interest for possible pharmacological reactivation of the Xi.

Indexed as

AnimalsAurora Kinase AAurora Kinase BAurora KinasesAzacitidineAzepinesCell LineCyclopropanesDecitabineDNA MethylationDrug Evaluation, PreclinicalDrug SynergismFemaleGene Knockdown TechniquesGenes, X-LinkedGreen Fluorescent ProteinsAurka protein, mouseAurkb protein, mouseAurora Kinase AAurora Kinase BAurora KinasesAzacitidineAzepinesCyclopropanesDecitabineGreen Fluorescent ProteinsMLN 8237PiperazinesPyrazolesPyrimidinestozasertibAurora kinaseDNA methyltransferasehigh-throughput screensmall moleculesX reactivation

Identifiers

PMID28182563
PMCPMC5167172
OpenAlexW2552371073

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.