Evidence map›Paper›PMID 28181519›Full record

ArticleNature communications2017

On the post-glacial spread of human commensal Arabidopsis thaliana.

Cheng-Ruei Lee, Hannes Svardal, Ashley Farlow, Moises Exposito-Alonso, Wei Ding, Polina Novikova, Carlos Alonso-Blanco, Detlef Weigel, Magnus Nordborg

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

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  16. Species-wide inventory ofProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Cheng-Ruei LeeGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.ORCID 0000-0002-1913-9964
Hannes SvardalGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.ORCID 0000-0001-7866-7313
Ashley FarlowGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.
Moises Exposito-AlonsoMax Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Wei DingMax Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Polina NovikovaGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.
Carlos Alonso-BlancoDepartamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB), Consejo Superior de Investigaciones Científicas (CSIC), Madrid 28049, Spain.
Detlef WeigelMax Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Magnus NordborgGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.ORCID 0000-0001-7178-9748

Funding

Austrian Science Fund FWF W 1225
6 · The paper itself

Abstract

Recent work has shown that Arabidopsis thaliana contains genetic groups originating from different ice age refugia, with one particular group comprising over 95% of the current worldwide population. In Europe, relicts of other groups can be found in local populations along the Mediterranean Sea. Here we provide evidence that these 'relicts' occupied post-glacial Eurasia first and were later replaced by the invading 'non-relicts', which expanded through the east-west axis of Eurasia, leaving traces of admixture in the north and south of the species range. The non-relict expansion was likely associated with human activity and led to a demographic replacement similar to what occurred in humans. Introgressed genomic regions from relicts are associated with flowering time and enriched for genes associated with environmental conditions, such as root cap development or metal ion trans-membrane transport, which suggest that admixture with locally adapted relicts helped the non-relicts colonize new habitats.

Indexed as

Ice CoverAdaptation, PhysiologicalArabidopsisBase PairingChromosomes, PlantFlowersGene OntologyGenome, PlantGeographyHaplotypesHumansHybridization, GeneticPolymorphism, Single Nucleotide

Identifiers

PMID28181519
PMCPMC5309843

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.