Evidence map›Paper›PMID 28180316›Full record

ArticleNucleic acids research2017

Selective RNA targeting and regulated signaling by RIG-I is controlled by coordination of RNA and ATP binding.

Megan E Fitzgerald, David C Rawling, Olga Potapova, Xiaoming Ren, Andrew Kohlway, Anna Marie Pyle

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Innate Inhibiting Proteins Enhance Expression and Immunogenicity of Self-Amplifying RNA.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. DHX15 Is a Coreceptor for RLR Signaling That Promotes Antiviral Defense Against RNA Virus Infection.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2019
    Article
  10. Significance and Role of Pattern Recognition Receptors in Malignancy.Archivum immunologiae et therapiae experimentalis · 2019
    Review
  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Megan E FitzgeraldDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
David C RawlingDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
Olga PotapovaDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Xiaoming RenDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Andrew KohlwayDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
Anna Marie PyleDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Yale University · USHoward Hughes Medical Institute · US

Funding

PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Structure and function of the HCV replication complexR01AI089826 · NIAID · YALE UNIVERSITY · PI LINDENBACH, BRETT D., PYLE, ANNA MARIE · 2010 to 2014
$2.9M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI089826NIGMS NIH HHS T32 GM008283
6 · The paper itself

Abstract

RIG-I is an innate immune receptor that detects and responds to infection by deadly RNA viruses such as influenza, and Hepatitis C. In the cytoplasm, RIG-I is faced with a difficult challenge: it must sensitively detect viral RNA while ignoring the abundance of host RNA. It has been suggested that RIG-I has a ‘proof-reading’ mechanism for rejecting host RNA targets, and that disruptions of this selectivity filter give rise to autoimmune diseases. Here, we directly monitor RNA proof-reading by RIG-I and we show that it is controlled by a set of conserved amino acids that couple RNA and ATP binding to the protein (Motif III). Mutations of this motif directly modulate proof-reading by eliminating or enhancing selectivity for viral RNA, with major implications for autoimmune disease and cancer. More broadly, the results provide a physical explanation for the ATP-gated behavior of SF2 RNA helicases and receptor proteins.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAmino Acid SubstitutionAutoimmunityBinding SitesDEAD Box Protein 58HEK293 CellsHumansImmunity, InnateModels, MolecularMutagenesis, Site-DirectedNeoplasmsProtein Interaction Domains and MotifsReceptors, ImmunologicReceptors, Pattern RecognitionRNAAdenosine TriphosphatasesAdenosine TriphosphateDEAD Box Protein 58Receptors, ImmunologicReceptors, Pattern RecognitionRIGI protein, humanRNARNA, Viral

Identifiers

PMID28180316
PMCPMC5388420
OpenAlexW2519450415

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.