Evidence map›Paper›PMID 28179590›Full record

ArticleOncotarget2017

Whole-exome sequencing identified mutational profiles of high-grade colon adenomas.

Sung Hak Lee, Seung Hyun Jung, Tae-Min Kim, Je-Keun Rhee, Hyeon-Chun Park, Min Sung Kim, Sung Soo Kim, Chang Hyeok An, Sug Hyung Lee, Yeun-Jun Chung

Open access · diamondAbstract readMulticenter Study
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. An Apoptosis-Related Gene Prognostic Index for Colon Cancer.Frontiers in cell and developmental biology · 2021
    Article
  12. Review
  13. An LCM-based genomic analysis of SPEM, Gastric Cancer and Pyloric Gland Adenoma in an Asian cohort.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  14. Genetic alterations related to endoscopic treatment of colorectal tumors.JGH open : an open access journal of gastroenterology and hepatology · 2020
    Article
  15. Article
  16. Article
  17. Mutation Profiling of Premalignant Colorectal Neoplasia.Gastroenterology research and practice · 2019
    Article
  18. Review
  19. Review
  20. Does MutatedCancer prevention research (Philadelphia, Pa.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Sung Hak LeeDepartments of Hospital Pathology, The Catholic University of Korea, Seoul, Korea.
Seung Hyun JungDepartments of Integrated Research Center for Genome Polymorphism, The Catholic University of Korea, Seoul, Korea.
Tae-Min KimDepartments of Medical Informatics, The Catholic University of Korea, Seoul, Korea.
Je-Keun RheeDepartments of Medical Informatics, The Catholic University of Korea, Seoul, Korea.
Hyeon-Chun ParkDepartments of Microbiology, The Catholic University of Korea, Seoul, Korea.
Min Sung KimDepartments of Pathology, The Catholic University of Korea, Seoul, Korea.
Sung Soo KimDepartment of Internal Medicine, The Catholic University of Korea, Seoul, Korea.
Chang Hyeok AnDepartments of General Surgery The Catholic University of Korea, Seoul, Korea.
Sug Hyung LeeDepartments of Pathology, The Catholic University of Korea, Seoul, Korea.
Yeun-Jun ChungDepartments of Microbiology, The Catholic University of Korea, Seoul, Korea.
Catholic University of Korea · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although gene-to-gene analyses identified genetic alterations such as APC, KRAS and TP53 mutations in colon adenomas, it is largely unknown whether there are any others in them. Mutational profiling of high-grade colon adenoma (HGCA) that just precedes colon carcinoma might identify not only novel adenoma-specific genes but also critical genes for its progression to carcinoma. For this, we performed whole-exome sequencing (WES) of 12 HGCAs and identified 11 non-hypermutated and one hypermutated (POLE-mutated) cases. We identified 22 genes including APC, KRAS, TP53, GNAS, NRAS, SMAD4, ARID2, and PIK3CA with non-silent mutations in the cancer Census Genes. Bi-allelic and mono-allelic APC alterations were found in nine and one HGCAs, respectively, while the other two harbored wild-type APC. Five HGCAs harbored either mono-allelic (four HGCAs) or bi-allelic (one HGCA) SMAD4 mutation or 18q loss that had been known as early carcinoma-specific changes. We identified MTOR, ACVR1B, GNAQ, ATM, CNOT1, EP300, ARID2, RET and MAP2K4 mutations for the first time in colon adenomas. Our WES data is largely matched with the earlier 'adenoma-carcinoma model' (APC, KRAS, NRAS and GNAS mutations), but there are newly identified SMAD4, MTOR, ACVR1B, GNAQ, ATM, CNOT1, EP300, ARID2, RET and MAP2K4 mutations in this study. Our findings provide resource for understanding colon premalignant lesions and for identifying genomic clues for differential diagnosis and therapy options for colon adenomas and carcinomas.

Indexed as

Exome SequencingMutationTranscriptomeAdenomaAgedBiomarkers, TumorColonic NeoplasmsDNA Copy Number VariationsDNA Mutational AnalysisFemaleGene DosageGene Expression ProfilingGenetic Predisposition to DiseaseHigh-Throughput Nucleotide SequencingHumansMaleBiomarkers, Tumoradenomacolonhigh grade adenomamutationwhole-exome sequencing

Identifiers

PMID28179590
PMCPMC5351654
OpenAlexW2565306534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.