Evidence map›Paper›PMID 28179566›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Human and rat gut microbiome composition is maintained following sleep restriction.

Shirley L Zhang, Lei Bai, Namni Goel, Aubrey Bailey, Christopher J Jang, Frederic D Bushman, Peter Meerlo, David F Dinges, Amita Sehgal

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 4 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 4 syntheses or guidelines pooled it, 136 citations in OpenAlex.

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  4. Prevalence of sleep disorder in irritable bowel syndrome: A systematic review with meta-analysis.Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shirley L ZhangChronobiology Program, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Lei BaiHoward Hughes Medical Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Namni GoelCenter for Sleep and Circadian Neurobiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Aubrey BaileyDepartment of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Christopher J JangHoward Hughes Medical Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Frederic D BushmanDepartment of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Peter MeerloGroningen Institute for Evolutionary Life Sciences, University of Groningen, 9702 Groningen, The Netherlands.
David F DingesDivision of Sleep and Chronobiology, Department of Psychiatry, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Amita SehgalChronobiology Program, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104; amita@mail.med.upenn.edu.
University of Pennsylvania · USHoward Hughes Medical Institute · USUniversity of Groningen · NL

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
TRAINING PROGRAM/RESPIRATORY NEUROBIOLOGY AND SLEEPT32HL007713 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PACK, ALLAN I · 1992 to 2022
$11.9M
NEUROBEHAVIORAL EFFECTS OF PARTIAL SLEEP DEPRIVATIONR01NR004281 · NINR · UNIVERSITY OF PENNSYLVANIA · PI DINGES, DAVID F · 1995 to 2014
$7.9M
Clinical research scholars programs in psychiatryR25MH060490 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI EVANS, DWIGHT L. · 1999 to 2013
$3.5M
Howard Hughes Medical InstituteNHLBI NIH HHS T32 HL007713NIAID NIH HHS P30 AI045008NIMH NIH HHS R25 MH060490NINR NIH HHS R01 NR004281
6 · The paper itself

Abstract

Insufficient sleep increasingly characterizes modern society, contributing to a host of serious medical problems. Loss of sleep is associated with metabolic diseases such as obesity and diabetes, cardiovascular disorders, and neurological and cognitive impairments. Shifts in gut microbiome composition have also been associated with the same pathologies; therefore, we hypothesized that sleep restriction may perturb the gut microbiome to contribute to a disease state. In this study, we examined the fecal microbiome by using a cross-species approach in both rat and human studies of sleep restriction. We used DNA from hypervariable regions (V1-V2) of 16S bacteria rRNA to define operational taxonomic units (OTUs) of the microbiome. Although the OTU richness of the microbiome is decreased by sleep restriction in rats, major microbial populations are not altered. Only a single OTU, TM7-3a, was found to increase with sleep restriction of rats. In the human microbiome, we find no overt changes in the richness or composition induced by sleep restriction. Together, these results suggest that the microbiome is largely resistant to changes during sleep restriction.

Indexed as

AdultAnimalsCognitionDNA, BacterialDysbiosisFecesFemaleGastrointestinal MicrobiomeGastrointestinal TractGenes, rRNAHealthy VolunteersHumansMaleMetabolic DiseasesMiddle AgedRatsDNA, BacterialRNA, Ribosomal, 16Scognitiongutmicrobiomesleep deprivationsleep restriction

Identifiers

PMID28179566
PMCPMC5338418
OpenAlexW2586552311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.