Evidence map›Paper›PMID 28179544›Full record

ArticleJournal of the Royal Society, Interface2017

Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform.

Cristian Versari, Szymon Stoma, Kirill Batmanov, Artémis Llamosi, Filip Mroz, Adam Kaczmarek, Matt Deyell, Cédric Lhoussaine, Pascal Hersen, Gregory Batt

Abstract readComparative Study
In one paragraph

Article in Journal of the Royal Society, Interface, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Cell-size regulation in budding yeast does not depend on linear accumulation of Whi5.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cristian VersariBioComputing, CRIStAL, Université Lille 1, Lille, France Cristian.Versari@univ-lille1.fr.
Szymon StomaScientific Center for Optical and Electron Microscopy (ScopeM), ETH Zurich, Zurich, Switzerland.
Kirill BatmanovBioComputing, CRIStAL, Université Lille 1, Lille, France.
Artémis LlamosiLaboratoire Matières et Systèmes Complexes, UMR7057, CNRS and Université Paris Diderot, Paris, France.
Filip MrozInstitute of Computer Science, University of Wroclaw, Wroclaw, Poland.
Adam KaczmarekInstitute of Computer Science, University of Wroclaw, Wroclaw, Poland.
Matt DeyellLaboratoire Matières et Systèmes Complexes, UMR7057, CNRS and Université Paris Diderot, Paris, France.
Cédric LhoussaineBioComputing, CRIStAL, Université Lille 1, Lille, France.ORCID 0000-0002-3970-3761
Pascal HersenLaboratoire Matières et Systèmes Complexes, UMR7057, CNRS and Université Paris Diderot, Paris, France.ORCID 0000-0003-2379-4280
Gregory BattInria and Université Paris-Saclay, Palaiseau, France.ORCID 0000-0003-1697-139X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the continuous expansion of single cell biology, the observation of the behaviour of individual cells over extended durations and with high accuracy has become a problem of central importance. Surprisingly, even for yeast cells that have relatively regular shapes, no solution has been proposed that reaches the high quality required for long-term experiments for segmentation and tracking (S&T) based on brightfield images. Here, we present

Indexed as

Cell TrackingImage Processing, Computer-AssistedSchizosaccharomycesimage analysisimaging benchmarkparameter learningsegmentation and tracking

Identifiers

PMID28179544
PMCPMC5332563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.