ArticleGenetics2017
Genomic Rearrangements in
Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- Comparison of linkage and association mapping in MAGIC lines identifies AtMTP3 as a new gene controlling natural variation in leaf zinc concentration in Arabidopsis.Journal of experimental botany · 2025Article
- Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus.GigaScience · 2024Article
- Genetic Mapping of Multiple Traits Identifies Novel Genes for Adiposity, Lipids, and Insulin Secretory Capacity in Outbred Rats.Diabetes · 2023Article
- Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding.Heredity · 2020Review
- Does divergence from normal patterns of integration increase as chromosomal fusions increase in number? A test on a house mouse hybrid zone.Current zoology · 2020Article
- Evaluating Structural Variation Detection Tools for Long-Read Sequencing Datasets inFrontiers in genetics · 2020Article
- SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.Genome biology · 2019Article
- Components of the ribosome biogenesis pathway underlie establishment of telomere length set point in Arabidopsis.Nature communications · 2019Article
- Modeling copy number variation in the genomic prediction of maize hybrids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Natural variation in acyl editing is a determinant of seed storage oil composition.Scientific reports · 2018Article
- A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana.Nucleic acids research · 2018Article
- Accurate detection of complex structural variations using single-molecule sequencing.Nature methods · 2018Article
- Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana.Genome biology · 2017Article
- Unstable Inheritance of 45S rRNA Genes inG3 (Bethesda, Md.) · 2017Article
- Genome Wide Analysis of Fatty Acid Desaturation and Its Response to Temperature.Plant physiology · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
22 authors.
Funding
Abstract
To understand the population genetics of structural variants and their effects on phenotypes, we developed an approach to mapping structural variants that segregate in a population sequenced at low coverage. We avoid calling structural variants directly. Instead, the evidence for a potential structural variant at a locus is indicated by variation in the counts of short-reads that map anomalously to that locus. These structural variant traits are treated as quantitative traits and mapped genetically, analogously to a gene expression study. Association between a structural variant trait at one locus, and genotypes at a distant locus indicate the origin and target of a transposition. Using ultra-low-coverage (0.3×) population sequence data from 488 recombinant inbred
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.