Evidence map›Paper›PMID 28179314›Full record

ArticleAnticancer research2017

DNA Methylation in Breast Tumor from High-risk Women in the Breast Cancer Family Registry.

Hui-Chen Wu, Melissa C Southey, Hanina Hibshoosh, Regina M Santella, Mary Beth Terry

Abstract read
In one paragraph

Article in Anticancer research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hui-Chen WuDepartment of Environmental Health Sciences, Mailman School of Public Health of Columbia University, New York, NY, U.S.A. hw2057@columbia.edu.
Melissa C SoutheyDepartment of Pathology, The University of Melbourne, Melbourne, Victoria, Australia.
Hanina HibshooshDepartment of Pathology and Cell Biology, College of Physicians & Surgeons of Columbia University, New York, NY, U.S.A.
Regina M SantellaDepartment of Environmental Health Sciences, Mailman School of Public Health of Columbia University, New York, NY, U.S.A.
Mary Beth TerryHerbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY, U.S.A.

Funding

True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
Breast Cancer Family Registry CohortUM1CA164920 · NCI · CANCER PREVENTION INSTIT OF CALIFORNIA · PI ANDRULIS, IRENE, BUYS, SAUNDRA S · 2012 to 2017
$12.7M
NCI NIH HHS UM1 CA164920NIEHS NIH HHS P30 ES009089
6 · The paper itself

Abstract

To examine DNA methylation profiles in breast tumors of women with a strong breast cancer family history, we measured methylation by bisulfite sequencing in 40 genes in 40 breast tumor tissues from women in the Breast Cancer Family Registry. We selected candidate genes from analysis of the Cancer Genome Atlas project (TCGA) breast data. Compared to TCGA breast cancer, BCFR cases are younger and more likely to be ER-negative. Overall, we found that many of the methylation differences between BCFR tumor and normal adjacent tissues were smaller than that in TCGA samples. We found only 32% of tested genes were hypermethylated in BCFR; the largest difference was 36.1% for SEPW1, and the smallest difference was 10% for RYR2. These data suggest the importance of examining breast cancer cases including familial cases enriched with early-onset cancers to identify methylation markers that can be examined in blood as biomarkers for early detection.

Indexed as

DNA MethylationAdultAgedBreast NeoplasmsFamily HealthFemaleGene FrequencyGenetic Predisposition to DiseaseGenetic TestingGenome-Wide Association StudyHumansMiddle AgedReceptors, EstrogenRegistriesReceptors, EstrogenBreast cancerDNA methylationepigeneticspromoter DNA methylationTCGA

Identifiers

PMID28179314
PMCPMC5505167

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.