Evidence map›Paper›PMID 28179147›Full record

ArticleBiochemical and biophysical research communications2017

Structural basis of PDZ-mediated chemokine receptor CXCR2 scaffolding by guanine nucleotide exchange factor PDZ-RhoGEF.

Nicholas Spellmon, Joshua Holcomb, Andrea Niu, Vishakha Choudhary, Xiaonan Sun, Yingxue Zhang, Junmei Wan, Maysaa Doughan, Stephanie Hayden, Fatme Hachem and 3 more

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Therapeutic inhibition of CXCR1/2: where do we stand?Internal and emergency medicine · 2023
    Review
  2. Article
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Nicholas SpellmonDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Joshua HolcombDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Andrea NiuDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Vishakha ChoudharyDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Xiaonan SunDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Yingxue ZhangDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Junmei WanDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Maysaa DoughanDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Stephanie HaydenDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Fatme HachemDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA.
Joseph BrunzelleAdvanced Photon Source, Argonne National Lab, Argonne, IL, USA.
Chunying LiCenter for Molecular and Translational Medicine, Georgia State University, Atlanta, GA, USA. Electronic address: cli19@gsu.edu.
Zhe YangDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI, USA. Electronic address: zyang@med.wayne.edu.
Wayne State University · USArgonne National Laboratory · USGeorgia State University · US

Funding

Chemokine Signaling in EPC Angiogenesis: A Role of Lysine MethylationR01HL128647 · NHLBI · WAYNE STATE UNIVERSITY · PI LI, CHUNYING · 2015 to 2019
$1.8M
NHLBI NIH HHS R01 HL128647
6 · The paper itself

Abstract

The CXC chemokine receptor 2 (CXCR2) is a G protein coupled receptor mediating interleukin-8 chemotactic signaling and plays an important role in neutrophil mobility and tumor migration. However, efficient CXCR2 signaling requires PDZ domain-mediated scaffolding of signaling complexes at the plasma membrane and functional coupling of the signaling to specific downstream signaling pathways, in which only one PDZ protein has been characterized to interact with CXCR2. Here, we identified five novel CXCR2-binding PDZ-containing proteins, among which PDZ-RhoGEF is of particular interest because this PDZ and RGS-containing guanine nucleotide exchange factor (GEF) is also involved in cell signaling and mobility. To reveal the molecular basis of the interaction, we solved the crystal structure of PDZ-RhoGEF PDZ domain in complex with the CXCR2 C-terminal PDZ binding motif. The structure reveals that the PDZ-CXCR2 binding specificity is achieved by numerous hydrogen bonds and hydrophobic contacts with the last four CXCR2 residues contributing to specific interactions. Structural comparison of CXCR2-binding PDZ domains and PDZ-RhoGEF PDZ bound with different ligands reveals PDZ- and ligand-specific interactions that may underlie the ability of promiscuous CXCR2 binding by different PDZ domains and PDZ binding promiscuity. The structure also reveals an unexpected asymmetric disulfide bond-linked PDZ dimer that allows simultaneous parallel binding of CXCR2 to two PDZ domains. This study provides not only the structural basis for PDZ-mediated CXCR2-PDZ-RhoGEF interaction, but also a new mode of PDZ dimerization, which both could prove valuable in understanding signaling complex scaffolding in CXCR2 signaling and coupling to specific signaling pathways.

Indexed as

PDZ DomainsProtein MultimerizationAmino Acid SequenceBinding SitesCrystallography, X-RayHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsLigandsModels, MolecularProtein BindingReceptors, Interleukin-8BRho Guanine Nucleotide Exchange FactorsSequence Homology, Amino AcidLigandsReceptors, Interleukin-8BRho Guanine Nucleotide Exchange FactorsChemokine signalingCXCR2DimerizationPDZ-RhoGEFScaffold proteinX-ray crystallography

Identifiers

PMID28179147
PMCPMC5367461
OpenAlexW2584730485

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.