Evidence map›Paper›PMID 28178945›Full record

ArticleBMC genomics2017

Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores.

Sara Zaldívar-López, Jennie L Rowell, Elise M Fiala, Isain Zapata, C Guillermo Couto, Carlos E Alvarez

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sara Zaldívar-LópezCenter for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
Jennie L RowellCenter for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
Elise M FialaCenter for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
Isain ZapataCenter for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
C Guillermo CoutoCollege of Veterinary Medicine, The Ohio State University, Columbus, OH, USA.
Carlos E AlvarezCenter for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA. alvarez.73@osu.edu.
Nationwide Children's Hospital · USThe Ohio State University · US

Funding

DNA Copy Number Variation in DogsR21HG004663 · NHGRI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI ALVAREZ, CARLOS E. · 2009 to 2010
$396k
Osteosarcoma Genetics Using an Animal ModelF31NR011559 · NINR · OHIO STATE UNIVERSITY · PI ROWELL, JENNIE L. · 2009 to 2011
$68k
NHGRI NIH HHS R21 HG004663NINR NIH HHS F31 NR011559
6 · The paper itself

Abstract

backgroundThe main function of hemoglobin (Hb) is to transport oxygen in the circulation. It is among the most highly studied proteins due to its roles in physiology and disease, and most of our understanding derives from comparative research. There is great diversity in Hb gene evolution in placental mammals, mostly in the repertoire and regulation of the β-globin subunits. Dogs are an ideal model in which to study Hb genes because: 1) they are members of Laurasiatheria, our closest relatives outside of Euarchontoglires (including primates, rodents and rabbits), 2) dog breeds are isolated populations with their own Hb-associated genetics and diseases, and 3) their high level of health care allows for development of biomedical investigation and translation.

resultsWe established that dogs have a complement of five α and five β-globin genes, all of which can be detected as spliced mRNA in adults. Strikingly, HBD, the allegedly-unnecessary adult β-globin protein in humans, is the primary adult β-globin in dogs and other carnivores; moreover, dogs have two active copies of the HBD gene. In contrast, the dominant adult β-globin of humans, HBB, has high sequence divergence and is expressed at markedly lower levels in dogs. We also showed that canine HBD and HBB genes are complex chimeras that resulted from multiple gene conversion events between them. Lastly, we showed that the strongest signal of evolutionary selection in a high-altitude breed, the Bernese Mountain Dog, lies in a haplotype block that spans the β-globin locus.

conclusionsWe report the first molecular genetic characterization of Hb genes in dogs. We found important distinctions between adult β-globin expression in carnivores compared to other members of Laurasiatheria. Our findings are also likely to raise new questions about the significance of human HBD. The comparative genomics of dog hemoglobin genes sets the stage for diverse research and translation.

Indexed as

Comparative Genomic Hybridizationalpha-GlobinsAnimalsBase Sequencebeta-GlobinsChimerismDogsEvolution, MolecularGenetic LociHaplotypesHemoglobinsHumansMultigene FamilyPhylogenyPromoter Regions, GeneticProtein Structure, Quaternaryalpha-Globinsbeta-GlobinsHemoglobinsCanineComparative genomicsGeneticsGlobinHBBHBDHBHHemoglobin

Identifiers

PMID28178945
PMCPMC5299747
OpenAlexW2586453299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.