Evidence map›Paper›PMID 28178307›Full record

ArticlePloS one2017

Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.

Vahid Omidvar, Irina Mohorianu, Tamas Dalmay, Yi Zheng, Zhangjun Fei, Anna Pucci, Andrea Mazzucato, Vendula Večeřová, Michaela Sedlářova, Martin Fellner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  5. Knockout ofPlants (Basel, Switzerland) · 2020
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  13. Phenotypic, genetic and molecular characterization of 7B-1, a conditional male-sterile mutant in tomato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Vahid OmidvarLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University and Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc-Holice, Czech Republic.
Irina MohorianuSchool of Computing Sciences, University of East Anglia, Norwich, United Kingdom.
Tamas DalmaySchool of Biological Sciences, University of East Anglia, Norwich, United Kingdom.
Yi ZhengBoyce Thompson Institute, Cornell University, Ithaca, NY, United States of America.
Zhangjun FeiBoyce Thompson Institute, Cornell University, Ithaca, NY, United States of America.
Anna PucciDepartment of Agricultural and Forestry Sciences, University of Tuscia, Viterbo, Italy.
Andrea MazzucatoDepartment of Agricultural and Forestry Sciences, University of Tuscia, Viterbo, Italy.
Vendula VečeřováDepartment of Botany, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc-Holice, Czech Republic.
Michaela SedlářovaDepartment of Botany, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc-Holice, Czech Republic.
Martin FellnerLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University and Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc-Holice, Czech Republic.
Palacký University Olomouc · CZCornell University · USUniversità degli Studi della Tuscia · ITUniversity of East Anglia · GBCzech Academy of Sciences, Institute of Experimental Botany · CZ

Funding

Biotechnology and Biological Sciences Research Council BB/G008078/1
6 · The paper itself

Abstract

The 7B-1 tomato (Solanum lycopersicum L. cv Rutgers) is a male-sterile mutant with enhanced tolerance to abiotic stress, which makes it a potential candidate for hybrid seed breeding and stress engineering. To underline the molecular mechanism regulating the male-sterility in 7B-1, transcriptomic profiles of the 7B-1 male-sterile and wild type (WT) anthers were studied using mRNA sequencing (RNA-Seq). In total, 768 differentially expressed genes (DEGs) were identified, including 132 up-regulated and 636 down-regulated transcripts. Gene ontology (GO) enrichment analysis of DEGs suggested a general impact of the 7B-1 mutation on metabolic processes, such as proteolysis and carbohydrate catabolic process. Sixteen candidates with key roles in regulation of anther development were subjected to further analysis using qRT-PCR and in situ hybridization. Cytological studies showed several defects associated with anther development in the 7B-1 mutant, including unsynchronized anther maturation, dysfunctional meiosis, arrested microspores, defect in callose degradation and abnormal tapetum development. TUNEL assay showed a defect in programmed cell death (PCD) of tapetal cells in 7B-1 anthers. The present study provides insights into the transcriptome of the 7B-1 mutant. We identified several genes with altered expression level in 7B-1 (including beta-1,3 glucanase, GA2oxs, cystatin, cysteine protease, pectinesterase, TA29, and actin) that could potentially regulate anther developmental processes, such as meiosis, tapetum development, and cell-wall formation/degradation.

Indexed as

Gene Expression Regulation, PlantMutationTranscription, GeneticComputational BiologyGene Expression ProfilingGene OntologyGlucansPlant InfertilitySolanum lycopersicumcalloseGlucans

Identifiers

PMID28178307
PMCPMC5298235
OpenAlexW2587521694

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.