Evidence map›Paper›PMID 28177319›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

Expression and crystallographic studies of D-glycero-β-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei.

Jimin Park, Hyojin Kim, Suwon Kim, Daeun Lee, Dong Hae Shin

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Crystal structure of protein tyrosine phosphatase-2 from Cydia pomonella granulovirus.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jimin ParkCollege of Pharmacy, Ewha W. University, 52 Ewhayeodae-gil, Seoul 03760, Republic of Korea.
Hyojin KimCollege of Pharmacy, Ewha W. University, 52 Ewhayeodae-gil, Seoul 03760, Republic of Korea.
Suwon KimCollege of Pharmacy, Ewha W. University, 52 Ewhayeodae-gil, Seoul 03760, Republic of Korea.
Daeun LeeCollege of Pharmacy, Ewha W. University, 52 Ewhayeodae-gil, Seoul 03760, Republic of Korea.
Dong Hae ShinCollege of Pharmacy, Ewha W. University, 52 Ewhayeodae-gil, Seoul 03760, Republic of Korea.
Ewha Womans University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gram-negative bacterium Burkholderia pseudomallei is the causative agent of melioidosis. D-glycero-β-D-manno-Heptose-1-phosphate adenylyltransferase (HldC) is the fourth enzyme of the ADP-L-glycero-β-D-manno-heptose biosynthesis pathway, which produces an essential carbohydrate comprising the inner core of lipopolysaccharide. Therefore, HldC is a potential target of antibiotics against melioidosis. In this study, HldC from B. pseudomallei has been cloned, expressed, purified and crystallized. Synchrotron X-ray data from a selenomethionine-substituted HldC crystal were also collected to 2.8 Å resolution. The crystal belonged to the primitive triclinic space group P1, with unit-cell parameters a = 74.0, b = 74.0, c = 74.9 Å, α = 108.4, β = 108.4, γ = 108.0°. Eight protomers are present in the unit cell and three out of five selenomethionines were found in each protomer using the PHENIX software suite. A full structural determination is in progress to elucidate the structure-function relationship of the protein.

Indexed as

Amino Acid SequenceBacterial ProteinsBurkholderia pseudomalleiCloning, MolecularCrystallizationCrystallography, X-RayEscherichia coliGene ExpressionHeptosesPhosphotransferases (Alcohol Group Acceptor)PlasmidsRecombinant ProteinsX-Ray DiffractionBacterial Proteinsglycero-manno-heptoseHeptosesPhosphotransferases (Alcohol Group Acceptor)Recombinant ProteinsBurkholderia pseudomalleid-glycero-β-d-manno-heptose-1-phosphate adenylyltransferaseheptose biosynthesis pathwayHldCmelioidosis

Identifiers

PMID28177319
PMCPMC5297929
OpenAlexW2571843540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.