Evidence map›Paper›PMID 28177285›Full record

ArticleeLife2017

Target DNA bending by the Mu transpososome promotes careful transposition and prevents its reversal.

James R Fuller, Phoebe A Rice

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  8. Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Jumping Ahead withViruses · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

James R FullerDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.ORCID 0000-0002-9029-0923
Phoebe A RiceDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.ORCID 0000-0002-3467-341X
University of Oxford · GB

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
Mechanisms for the evolution of novel DNA specificity in a transcription factor fR01GM104397 · NIGMS · UNIVERSITY OF CHICAGO · PI THORNTON, JOSEPH W · 2013 to 2016
$1.3M
Structural understanding of Mu transpositionR01GM101989 · NIGMS · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2013 to 2016
$1.3M
ISS ChronosBH Fluorescence Lifetime SpectrometerS10RR026988 · NCRR · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 2010 to 2010
$212k
NCRR NIH HHS S10 RR026988NIGMS NIH HHS R01 GM101989NIGMS NIH HHS R01 GM104397NIGMS NIH HHS T32 GM007183
6 · The paper itself

Abstract

The transposition of bacteriophage Mu serves as a model system for understanding DDE transposases and integrases. All available structures of these enzymes at the end of the transposition reaction, including Mu, exhibit significant bends in the transposition target site DNA. Here we use Mu to investigate the ramifications of target DNA bending on the transposition reaction. Enhancing the flexibility of the target DNA or prebending it increases its affinity for transpososomes by over an order of magnitude and increases the overall reaction rate. This and FRET confirm that flexibility is interrogated early during the interaction between the transposase and a potential target site, which may be how other DNA binding proteins can steer selection of advantageous target sites. We also find that the conformation of the target DNA after strand transfer is involved in preventing accidental catalysis of the reverse reaction, as conditions that destabilize this conformation also trigger reversal.

Indexed as

Nucleic Acid ConformationBacteriophage muDNATransposasesDNATransposasesbiochemistrybiophysicsDNA bendingE. coliintegrationMustructural biologytransposition

Identifiers

PMID28177285
PMCPMC5357137
OpenAlexW2586333984

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.