Evidence map›Paper›PMID 28176812›Full record

ArticleScientific reports2017

Quantification of Detergents Complexed with Membrane Proteins.

Vincent Chaptal, Frédéric Delolme, Arnaud Kilburg, Sandrine Magnard, Cédric Montigny, Martin Picard, Charlène Prier, Luca Monticelli, Olivier Bornert, Morgane Agez and 10 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
  3. Emergence of mass spectrometry detergents for membrane proteomics.Analytical and bioanalytical chemistry · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Vincent ChaptalLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Frédéric DelolmeProtein Science Facility, UMS 3444, IBCP, Lyon 69367, France.
Arnaud KilburgLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Sandrine MagnardLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Cédric MontignyInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, University of Paris-Sud, 91198 Gif-sur-Yvette, France.
Martin PicardLaboratoire de Biologie Physico-Chimique des Protéines Membranaires, CNRS UMR 7099, 75005 Paris, France.
Charlène PrierLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Luca MonticelliLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Olivier BornertInstitut de Recherche de l'Ecole de Biotechnologie de Strasbourg, University of Strasbourg-CNRS, Illkirch, France.
Morgane AgezCALIXAR, 60 Avenue Rockefeller - 69008 Lyon, France.
Stéphanie RavaudInstitut de Biologie Structurale (IBS), University of Grenoble Alpes, CEA, CNRS, 38044 Grenoble, France.
Cédric OrelleLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
Renaud WagnerInstitut de Recherche de l'Ecole de Biotechnologie de Strasbourg, University of Strasbourg-CNRS, Illkirch, France.
Anass JawhariCALIXAR, 60 Avenue Rockefeller - 69008 Lyon, France.
Isabelle BroutinLaboratoire de Cristallographie et RMN Biologiques, CNRS UMR 8015, 75006 Paris, France.
Eva Pebay-PeyroulaInstitut de Biologie Structurale (IBS), University of Grenoble Alpes, CEA, CNRS, 38044 Grenoble, France.
Jean-Michel JaultLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.
H Ronald KabackDepartment of Physiology, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095 USA.
Marc le MaireInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, University of Paris-Sud, 91198 Gif-sur-Yvette, France.
Pierre FalsonLaboratory of Molecular Microbiology and Structural Biochemistry, CNRS UMR 5086, IBCP, Lyon 69367 France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most membrane proteins studies require the use of detergents, but because of the lack of a general, accurate and rapid method to quantify them, many uncertainties remain that hamper proper functional and structural data analyses. To solve this problem, we propose a method based on matrix-assisted laser desorption/ionization mass spectrometry (MALDI-TOF MS) that allows quantification of pure or mixed detergents in complex with membrane proteins. We validated the method with a wide variety of detergents and membrane proteins. We automated the process, thereby allowing routine quantification for a broad spectrum of usage. As a first illustration, we show how to obtain information of the amount of detergent in complex with a membrane protein, essential for liposome or nanodiscs reconstitutions. Thanks to the method, we also show how to reliably and easily estimate the detergent corona diameter and select the smallest size, critical for favoring protein-protein contacts and triggering/promoting membrane protein crystallization, and to visualize the detergent belt for Cryo-EM studies.

Indexed as

DetergentsLiposomesMembrane ProteinsMicellesModels, MolecularReproducibility of ResultsSensitivity and SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationDetergentsLiposomesMembrane ProteinsMicelles

Identifiers

PMID28176812
PMCPMC5297245

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.