ArticleRice (New York, N.Y.)2017
Evolutionary analysis of the SUB1 locus across the Oryza genomes.
Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Adaptive Responses of Tropical Crops: A Multi-Scale Omics Integrated Perspective.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Review
- Surviving floods: Escape and quiescence strategies of rice coping with submergence.Plant physiology · 2025Article
- The International Oryza Map Alignment Project (IOMAP): the Americas-past achievements and future directions.Journal of experimental botany · 2023Article
- Xa7, a Small Orphan Gene Harboring Promoter Trap for AvrXa7, Leads to the Durable Resistance to Xanthomonas oryzae Pv. oryzae.Rice (New York, N.Y.) · 2021Article
- Article
- A Pathovar ofFrontiers in plant science · 2019Article
- Development of an intergeneric hybrid betweenBreeding science · 2018Article
- Multilevel Regulation of Abiotic Stress Responses in Plants.Frontiers in plant science · 2017Review
Corrections and comments
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Authors and funding
7 authors.
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Abstract
backgroundTolerance to complete submergence is recognized in a limited number of Asian rice (Oryza sativa L.) varieties, most of which contain submergence-inducible SUB1A on the polygenic SUBMERGENCE-1 (SUB1) locus. It has been shown that the SUB1 locus encodes two Ethylene-Responsive Factor (ERF) genes, SUB1B and SUB1C, in all O. sativa varieties. These genes were also found in O rufipogon and O nivara, wild relatives of O. sativa. However, detailed analysis of the polygenic locus in other Oryza species has not yet been made.
findingsChromosomal location, phylogenetic, and gene structure analyses have revealed that the SUB1 locus is conserved in the long arm of chromosome 9 in most Oryza species. We also show that the SUB1A-like gene of O. nivara is on chromosome 1 and that Leersia perrieri, a grass-tolerant to deep-flooding, presents three ERF genes in the SUB1 locus.
conclusionWe provide here a deeper insight into the evolutionary origin and variation of the SUB1 locus and raise the possibility that an association of these genes with flooding tolerance in L. perrieri may exist.
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