Evidence map›Paper›PMID 28176159›Full record

ArticleVirus genes2017

New Korean isolates of Pepper mild mottle virus (PMMoV) differ in symptom severity and subcellular localization of the 126 kDa protein.

Sang-Hyuk Han, Jong-Seo Park, Jae-Yeong Han, Jun-Su Gong, Chan-Hwan Park, Jung-Kyu Kim, Eun-Young Seo, Leslie L Domier, John Hammond, Hyoun-Sub Lim

Abstract read
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Article in Virus genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
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  6. Complete Genome Sequence of aGenome announcements · 2018
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  7. The plant pathology journal · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sang-Hyuk HanDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Jong-Seo ParkDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Jae-Yeong HanDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Jun-Su GongDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Chan-Hwan ParkDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Jung-Kyu KimDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Eun-Young SeoDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea.
Leslie L DomierUnited States Department of Agriculture - Agricultural Research Service, University of Illinois at Urbana-Champaign, Department of Crop Sciences, Champaign, IL, 61801, USA.
John HammondUnited States Department of Agriculture - Agricultural Research Service, United States National Arboretum, Floral and Nursery Plants Research Unit, 10300 Baltimore Avenue B-010A, Beltsville, MD, 20705, USA. John.Hammond@ars.usda.gov.
Hyoun-Sub LimDepartment of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon, 305-764, Korea. hyounlim@cnu.ac.kr.
Chungnam National University · KRUnited States Department of Agriculture · USU.S. National Arboretum · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two isolates of Pepper mild mottle virus (PMMoV) were selected from a nationwide survey of pepper fields in South Korea in 2014 and 2015, in which Cucumber mosaic virus was also detected; the two PMMoV isolates, Sangcheong 47 (S-47, KX399390) and Jeongsong 76 (J-76, KX399389), share ~99% nucleotide and amino acid identity and are closely related to Japanese and Chinese isolates at the nucleotide level. Amino acid sequence comparisons revealed 99.73, 99.81, 98.44, and 100% identity in the ORF1, ORF2, MP, and CP, respectively, between S-47 and J-76. In addition, we generated infectious clones of S-47 and J-76, and T7 promoter driven transcripts of each inoculated to Nicotiana benthamiana produced very severe symptoms, whereas only mild symptoms developed in Capsicum annuum. Gene silencing suppressor function of 126 kDa and cytoskeleton-connected plasmodesmata localization of movement protein of S-47 and J-76 showed no difference between isolates, whereas 126 kDa of J-76 clearly formed intracellular aggregates not observed with S-47 126 kDa protein. Differences between these isolates in 126/183 kDa-related functions including subcellular localization suggest that differential interactions with host proteins may affect symptom development in C. annuum.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCapsicumCloning, MolecularCucumovirusDNA, ComplementaryGenome, ViralNicotianaPhylogenyPlant DiseasesPromoter Regions, GeneticRepublic of KoreaRNA VirusesTobamovirusViral ProteinsDNA, ComplementaryViral ProteinsFull-length infectious cDNA cloneIn vitro transcriptionNationwide surveySeed transmissionT7 promoter

Identifiers

PMID28176159
OpenAlexW2586916905

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.