Evidence map›Paper›PMID 28174557›Full record

ArticleFrontiers in microbiology2017

Human-Driven Microbiological Contamination of Benthic and Hyporheic Sediments of an Intermittent Peri-Urban River Assessed from MST and 16S rRNA Genetic Structure Analyses.

Romain Marti, Sébastien Ribun, Jean-Baptiste Aubin, Céline Colinon, Stéphanie Petit, Laurence Marjolet, Michèle Gourmelon, Laurent Schmitt, Pascal Breil, Marylise Cottet and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Romain MartiResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.
Sébastien RibunResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.
Jean-Baptiste AubinDEEP, INSA Lyon Villeurbanne, France.
Céline ColinonResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.
Stéphanie PetitResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.
Laurence MarjoletResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.
Michèle GourmelonInstitut Français de Recherche pour l'Exploitation de la Mer (IFREMER), SG2M-Laboratoire Santé Environnement et Microbiologie, RBE Département Plouzané, France.
Laurent SchmittLIVE 7362 Centre National de la Recherche Scientifique-ENGEES, LTER - "Zone Atelier Environnementale Urbaine" Strasbourg, France.
Pascal BreilInstitut National de Recherche en Sciences et Technologies pour l'Environnement et l'Agriculture (IRSTEA), UR HHLY Villeurbanne, France.
Marylise CottetUMR5600 "Environnement Ville Société," École Normale Supérieure de Lyon (ENS) Lyon - Descartes Lyon, France.
Benoit CournoyerResearch Group on "Bacterial Opportunistic Pathogens and Environment", UMR CNRS5557, INRA1418 Ecologie Microbienne, Université Lyon 1, VetAgro Sup Marcy L'Etoile, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (

Indexed as

benthic and hyporheic sedimentsfecal contaminationhigh throughput sequencing (HTS)microbial communityperi-urban river

Identifiers

PMID28174557
PMCPMC5258724

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.