Evidence map›Paper›PMID 28174134›Full record

ArticleEBioMedicine2017

Whole Exome Sequencing Reveals Severe Thrombophilia in Acute Unprovoked Idiopathic Fatal Pulmonary Embolism.

Matt Halvorsen, Ying Lin, Barbara A Sampson, Dawei Wang, Bo Zhou, Lucy S Eng, Sung Yon Um, Orrin Devinsky, David B Goldstein, Yingying Tang

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. Genetic Variants in the Protein S (TH open : companion journal to thrombosis and haemostasis · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Matt HalvorsenInstitute for Genomic Medicine, Columbia University Medical Center, United States.
Ying LinMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Barbara A SampsonMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Dawei WangMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Bo ZhouMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Lucy S EngMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Sung Yon UmMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States.
Orrin DevinskyDepartment of Neurology, NYU Langone Medical Center, United States.
David B GoldsteinInstitute for Genomic Medicine, Columbia University Medical Center, United States.
Yingying TangMolecular Genetics Laboratory, New York City Office of Chief Medical Examiner, United States. Electronic address: ytang@ocme.nyc.gov.
Office of Chief Medical Examiner · USColumbia University Irving Medical Center · USNYU Langone Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAcute unprovoked idiopathic fatal pulmonary embolism (IFPE) causes sudden death without an identifiable thrombogenic risk. We aimed to investigate the underlying genomic risks of IFPE through whole exome sequencing (WES).

methodsWe reviewed 14years of consecutive out-of-hospital fatal pulmonary embolism records (n=1478) from the ethnically diverse population of New York City. We selected 68 qualifying IFPE cases for WES. We compared the WES data of IFPE cases to those of 9332 controls to determine if there is an excess of rare damaging variants in the genome using ethnicity-matched controls in collapsing analyses.

findingsWe found nine of the 68 decedents (13·2%) who died of IFPE had at least one pathogenic or likely pathogenic variant in one of the three anti-coagulant genes: SERPINC1 (Antithrombin III), PROC, and PROS1. The odds ratio of developing IFPE as a variant carrier for SERPINC1 is 144·2 (95% CI, 26·3-779·4; P=1·7×10

interpretationThis study showed the important role of severe thrombophilia due to natural anti-coagulant deficiency in IFPE. Evaluating severe thrombophilia in out-of-hospital fatal PE beyond IFPE is warranted.

Indexed as

ExomeAdultAntithrombin IIIBlood ProteinsCase-Control StudiesDeath, SuddenFemaleHumansMalePolymorphism, GeneticProtein CProtein SPulmonary EmbolismThrombophiliaAntithrombin IIIBlood ProteinsPROS1 protein, humanProtein CProtein SSERPINC1 protein, humanIdiopathic fatal pulmonary embolismNatural anticoagulant deficiencySevere thrombophiliaWhole exome sequencing

Identifiers

PMID28174134
PMCPMC5360570
OpenAlexW2580480395

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.