ArticlePlant biotechnology journal2017
A novel functional gene associated with cold tolerance at the seedling stage in rice.
Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
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40 citing papers in PubMed, 99 citations in OpenAlex.
- OsERF5 enhances cold tolerance and is associated with GA‑mediated antioxidant defence in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Transcriptome Analysis IdentifiesPlants (Basel, Switzerland) · 2026Article
- Research progress on cold tolerance key genes and mechanisms in four major northern China crops.Frontiers in plant science · 2026Review
- Identification and Candidate Gene Analysis of qCTS11-TK9, a Novel Major Quantitative Trait Locus Associated with Chilling Tolerance in Rice Seedlings.Rice (New York, N.Y.) · 2025Article
- Suppressing an auxin efflux transporter enhances rice adaptation to temperate habitats.Nature communications · 2025Article
- Transcriptome Analysis Reveals the Pivotal Genes and Regulation Pathways Under Cold Stress and IdentifiesPlants (Basel, Switzerland) · 2025Article
- Natural variation of indels in the CTB3 promoter confers cold tolerance in japonica rice.Nature communications · 2025Article
- Integrating molecular markers and phenotypic analysis to assess cold tolerance in rice germplasm.Molecular breeding : new strategies in plant improvement · 2025Article
- Subtilisin-like protease 4 regulates cold tolerance through cell wall modification in rice.Scientific reports · 2025Article
- Identification of the Cold-Related Genes COLD11 and OsCTS11 via BSA-seq and Fine Mapping at the Rice Seedling Stage.Rice (New York, N.Y.) · 2024Article
- Identification of candidate genes controlling cold tolerance at the early seedling stage from Dongxiang wild rice by QTL mapping, BSA-Seq and RNA-Seq.BMC plant biology · 2024Article
- Integration of molecular breeding and multi-resistance screening for developing a promising restorer line Guihui5501 with heavy grain, good grain quality, and endurance to biotic and abiotic stresses.Frontiers in plant science · 2024Article
- Genetics of chilling response at early growth stage in rice: a recessive gene for tolerance and importance of acclimation.AoB PLANTS · 2023Article
- QTL mapping and identification of candidate genes for cold tolerance at the germination stage in wild rice.Genes & genomics · 2023Article
- The Global Changes of N6-methyldeoxyadenosine in Response to Low Temperature inPlants (Basel, Switzerland) · 2023Article
- Molecular Marker-Assisted Selection for Frost Tolerance in a Diallel Population of Potato.Cells · 2023Article
- COG2 negatively regulates chilling tolerance through cell wall components altered in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Article
- Combination of Genomics, Transcriptomics Identifies Candidate Loci Related to Cold Tolerance in Dongxiang Wild Rice.Plants (Basel, Switzerland) · 2022Article
- OsWRKY115 on qCT7 links to cold tolerance in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Identification and cloning of cold-tolerant genes that can stably express under different cold environments are crucial for molecular rice breeding for cold tolerance. In the previous study, we identified a cold-tolerant QTL at the seedling stage, qCTS-9 which could be detected under different cold environments using a recombinant inbred line (RIL) population derived from a cold-tolerant variety Lijiangxintuanheigu (LTH) and a cold-sensitive variety Shanhuangzhan 2 (SHZ-2). In this study, eight candidate genes within the qCTS-9 interval were identified through integrated analysis of QTL mapping with genomewide differential expression profiling of LTH. The qRT-PCR assay showed that only Os09g0410300 exhibited different expression patterns between LTH and SHZ-2 during cold stress, and significantly positive correlation was found between cold induction of Os09g0410300 and seedling cold tolerance in the RI lines. Five SNPs and one InDel in the promoters of Os09g0410300 were detected between LTH and SHZ-2, and the InDel marker ID410300 designed based on the insertion-deletion polymorphism in the promoter was significantly associated with seedling cold tolerance in RIL population. Further, Os09g0410300 over-expression plants exhibited enhanced cold tolerance at the seedling stage compared with the wild-type plants. Thus, our results suggest that Os09g0410300 is the functional gene underlying qCTS-9. To our knowledge, it is a novel gene contributed to enhance cold tolerance at the seedling stage in rice. Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS).
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