Evidence map›Paper›PMID 28173069›Full record

SynthesisHuman molecular genetics2016

A genetic variation associated with plasma erythropoietin and a non-coding transcript of PRKAR1A in sickle cell disease.

Xu Zhang, Binal N Shah, Wei Zhang, Santosh L Saraf, Galina Miasnikova, Adelina Sergueeva, Tatiana Ammosova, Xiaomei Niu, Mehdi Nouraie, Sergei Nekhai and 6 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Xu ZhangComprehensive Sickle Cell Center, Section of Hematology/Oncology, Department of Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Binal N ShahComprehensive Sickle Cell Center, Section of Hematology/Oncology, Department of Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Wei ZhangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Santosh L SarafComprehensive Sickle Cell Center, Section of Hematology/Oncology, Department of Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Galina MiasnikovaChuvash Republic Clinical Hospital 1, Cheboksary, Russia.
Adelina SergueevaCheboksary Children's Hospital, Cheboksary, Russia.
Tatiana AmmosovaCenter for Sickle Cell Disease, Howard University, Washington, DC, USA.
Xiaomei NiuCenter for Sickle Cell Disease, Howard University, Washington, DC, USA.
Mehdi NouraieCenter for Sickle Cell Disease, Howard University, Washington, DC, USA.
Sergei NekhaiCenter for Sickle Cell Disease, Howard University, Washington, DC, USA.
Oswaldo CastroCenter for Sickle Cell Disease, Howard University, Washington, DC, USA.
Mark T GladwinDivision of Pulmonary, Allergy, and Critical Care Medicine, Vascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Josef T PrchalHematology Division, University of Utah, Salt Lake City, UT, USA.
Joe G N GarciaUniversity of Arizona, College of Medicine, Tucson, AZ, USA.
Roberto F MachadoDepartment of Medicine, Pulmonary and Critical Care Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Victor R GordeukComprehensive Sickle Cell Center, Section of Hematology/Oncology, Department of Medicine, University of Illinois at Chicago, Chicago, IL, USA.
Howard University · USUniversity of Illinois Chicago · USChuvash State University · RUNorthwestern University · USUniversity of Arizona · USUniversity of Pittsburgh · USUniversity of Utah · US

Funding

Center for Clinical and Translational ScienceUL1TR000050 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI AZAR, DIMITRI T, MERMELSTEIN, ROBIN J. · 2012 to 2014
$9.8M
Vascular Targeting Genomic & Genetic Strategies for Acute Chest SyndromeR01HL111656 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI Roberto F. Machado · 2013 to 2026
$7.9M
Pulmonary Hypertension and the Hypoxic Response in SCDR01HL079912 · NHLBI · HOWARD UNIVERSITY · PI GORDEUK, VICTOR R · 2005 to 2008
$7.4M
Center for Hemoglobin Research in Minorities (CHaRM)P50HL118006 · NHLBI · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2013 to 2017
$7.0M
Role of Sphingolipid Pathways in the Pathobiology of PAHR01HL127342 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MACHADO, ROBERTO F., NATARAJAN, VISWANATHAN · 2016 to 2023
$4.5M
Howard University Research Scientist AwardR25HL003679 · NHLBI · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2005 to 2009
$1.7M
Genetics and Genomics of Sickle Cell Nephropathy.K23HL125984 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SARAF, SANTOSH · 2015 to 2018
$700k
Center for Clinical and Translational ScienceKL2TR000048 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI AZAR, DIMITRI T, MERMELSTEIN, ROBIN J. · 2012 to 2014
$559k
NHLBI Research Center at Howard UniversityP30HL107253 · NHLBI · HOWARD UNIVERSITY · PI TAYLOR, ROBERT E. · 2011 to 2012
$414k
NCATS NIH HHS KL2 TR000048NCATS NIH HHS UL1 TR000050NHLBI NIH HHS K23 HL125984NHLBI NIH HHS P30 HL107253NHLBI NIH HHS P50 HL118006NHLBI NIH HHS R01 HL079912NHLBI NIH HHS R01 HL111656NHLBI NIH HHS R01 HL127342NHLBI NIH HHS R25 HL003679
6 · The paper itself

Abstract

Blood erythropoietin (EPO) increases primarily to hypoxia. In sickle cell anaemia (homozygous HBBE6V; HbSS), plasma EPO is elevated due to hemolytic anaemia-related hypoxia. Hydroxyurea treatment reduces haemolysis and anaemia by increasing foetal haemoglobin, which leads to lower hypoxic transcriptional responses in blood mononuclear cells but paradoxically further increases EPO. To investigate this apparent hypoxia-independent EPO regulation, we assessed two sickle cell disease (SCD) cohorts for genetic associations with plasma EPO, by prioritizing 237,079 quantitative trait loci for expression level and/or transcript isoform variations of 12,727 genes derived from SCD blood mononuclear cells. We found an association between the T allele of SNP rs60684937 and increased plasma EPO (n = 567, combined P = 5.5 × 10 − 8 adjusted for haemoglobin and hydroxyurea) and validated it in independent SCD patients (n = 183, P = 0.018). The T allele of rs60684937 was associated with a relatively increased expression of a non-coding transcript of PRKAR1A (cAMP-dependent protein kinase type I-alpha regulatory subunit) in 58 SCD patients (P = 7.9 × 10 − 7) and 58 HapMap Yoruba samples (P = 0.0011). In conclusion, we demonstrate that plasma EPO elevation with hydroxyurea in SCD is independent of hypoxic responses and that genetic variation at SNP rs60684937 may contribute to EPO regulation through a cAMP-dependent protein kinase A pathway.

Indexed as

Gene Expression RegulationPharmacogenomic VariantsPolymorphism, Single NucleotideAnemia, Sickle CellAntisickling AgentsCyclic AMP-Dependent Protein Kinase RIalpha SubunitErythropoietinFemaleGene Expression ProfilingGenetic Association StudiesHumansHydroxyureaLeukocytes, MononuclearMaleAntisickling AgentsCyclic AMP-Dependent Protein Kinase RIalpha SubunitEPO protein, humanErythropoietinHydroxyureaPRKAR1A protein, human

Identifiers

PMID28173069
PMCPMC6078595
OpenAlexW2515428504

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.