ArticleGenome biology and evolution2017
De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices.
Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
11 citing papers in PubMed.
- Whole Genome Sequencing of the Moruga Hill Rice (Biotech (Basel (Switzerland)) · 2026Article
- Challenges in Bringing Pangenome Research Into Breeding: A Case Study in Rice.Plant biotechnology journal · 2026Review
- African Cultivated, Wild and Weedy Rice (Biology · 2024Review
- FrangiPANe, a tool for creating a panreference using left behind reads.NAR genomics and bioinformatics · 2023Article
- Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication.Rice (New York, N.Y.) · 2021Review
- Analyses of the Root-Knot Nematode (Pathogens (Basel, Switzerland) · 2020Article
- Allele mining unlocks the identification of RYMV resistance genes and alleles in African cultivated rice.BMC plant biology · 2020Article
- Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.Trends in plant science · 2020Review
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
- CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations.GigaScience · 2017Article
- Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Oryza glaberrima is one of the two cultivated species of rice, and harbors various interesting agronomic traits, especially in biotic and abiotic resistance, compared with its Asian cousin O. sativa. A previous reference genome was published but newer studies highlighted some missing parts. Moreover, global species diversity is known nowadays to be represented by more than one single individual. For that purpose, we sequenced, assembled and annotated de novo three different cultivars from O. glaberrima. After validating our assemblies, we were able to better solve complex regions than the previous assembly and to provide a first insight in pan-genomic divergence between individuals. The three assemblies shown large common regions, but almost 25% of the genome present collinearity breakpoints or are even individual specific.
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Registered trials
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