Evidence map›Paper›PMID 28170228›Full record

ArticleACS chemical biology2017

A Pair of Residues That Interactively Affect Diterpene Synthase Product Outcome.

Meirong Jia, Ke Zhou, Samuel Tufts, Samuel Schulte, Reuben J Peters

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Meirong JiaRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University , Ames, Iowa 50011, United States.
Ke ZhouRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University , Ames, Iowa 50011, United States.
Samuel TuftsRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University , Ames, Iowa 50011, United States.
Samuel SchulteRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University , Ames, Iowa 50011, United States.
Reuben J PetersRoy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University , Ames, Iowa 50011, United States.ORCID 0000-0003-4691-8477
Iowa State University · US

Funding

Enzymatic formation of the hydrocarbon skeletons underlying diterpenoid diversityR01GM076324 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2006 to 2019
$3.4M
NIGMS NIH HHS R01 GM076324
6 · The paper itself

Abstract

The labdane-related diterpenoids (LRDs) are an important superfamily of natural products whose structural diversity critically depends on the hydrocarbon skeletal structures generated, in large part, by class I diterpene synthases. In the plant kingdom, where the LRDs are predominantly found, the relevant class I diterpene synthases are clearly derived from the ent-kaurene synthase (KS) required in all land plants for phytohormone biosynthesis and, hence, are often termed KS-like (KSL). Previous work, initiated by the distinct function of two alleles of a KSL from rice, OsKSL5, identified a single residue switch with a profound effect on not only OsKSL5 product outcome but also that of land plant KSs more broadly, specifically, replacement of a key isoleucine with threonine, which interrupts formation of the tetracyclic ent-isokaurene at the tricyclic stage, leading to production of ent-pimaradiene instead. Here, further studies of these alleles led to discovery of another, nearby residue that tunes product outcome. Substitution for this newly identified residue is additionally shown to exert an epistatic effect in KSs, altering product distribution only if combined with replacement of the key isoleucine. On the other hand, this pair of residues was found to exert additive effects on the product outcome mediated by distantly related KSLs from the eudicot castor bean. Accordingly, it was possible to use a rational combination of substitutions for this pair of residues to engineer significantly increased (dominant) selectivity for novel 8α-hydroxy-ent-pimar-15-ene product outcome in the KS from the dicot Arabidopsis thaliana, demonstrating the utility of these results.

Indexed as

CyclizationDiterpenesLigasesSubstrate SpecificityDiterpenesLigases

Identifiers

PMID28170228
PMCPMC5360158
OpenAlexW2587226051

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.