Evidence map›Paper›PMID 28168870›Full record

ArticleHuman mutation2017

Annotation of functional impact of voltage-gated sodium channel mutations.

Valérie Hinard, Aurore Britan, Mathieu Schaeffer, Monique Zahn-Zabal, Urs Thomet, Jean-Sébastien Rougier, Amos Bairoch, Hugues Abriel, Pascale Gaudet

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Functional cross-talk between phosphorylation and disease-causing mutations in the cardiac sodium channel NaProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  2. Structural basis of cytoplasmic NaV1.5 and NaV1.4 regulation.The Journal of general physiology · 2021
    Review
  3. Article
  4. Article
  5. The Cellosaurus, a Cell-Line Knowledge Resource.Journal of biomolecular techniques : JBT · 2018
    Article
  6. Article
  7. Article
  8. NovelMolecular pain
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Valérie HinardCALIPHO Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Aurore BritanCALIPHO Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Mathieu SchaefferCALIPHO Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Monique Zahn-ZabalCALIPHO Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Urs ThometInstitute of Biochemistry and Molecular Medicine, Bern, Switzerland.
Jean-Sébastien RougierInstitute of Biochemistry and Molecular Medicine, Bern, Switzerland.
Amos BairochDepartment of Human Protein Science, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Hugues AbrielInstitute of Biochemistry and Molecular Medicine, Bern, Switzerland.
Pascale GaudetCALIPHO Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
SIB Swiss Institute of Bioinformatics · CHUniversity of Bern · CHUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Voltage-gated sodium channels are pore-forming transmembrane proteins that selectively allow sodium ions to flow across the plasma membrane according to the electro-chemical gradient thus mediating the rising phase of action potentials in excitable cells and playing key roles in physiological processes such as neurotransmission, skeletal muscle contraction, heart rhythm, and pain sensation. Genetic variations in the nine human genes encoding these channels are known to cause a large range of diseases affecting the nervous and cardiac systems. Understanding the molecular effect of genetic variations is critical for elucidating the pathologic mechanisms of known variations and in predicting the effect of newly discovered ones. To this end, we have created a Web-based tool, the Ion Channels Variants Portal, which compiles all variants characterized functionally in the human sodium channel genes. This portal describes 672 variants each associated with at least one molecular or clinical phenotypic impact, for a total of 4,658 observations extracted from 264 different research articles. These data were captured as structured annotations using standardized vocabularies and ontologies, such as the Gene Ontology and the Ion Channel ElectroPhysiology Ontology. All these data are available to the scientific community via neXtProt at https://www.nextprot.org/portals/navmut.

Indexed as

Computational BiologyDatabases, GeneticMutationAnimalsElectrophysiological PhenomenaGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeHumansMolecular Sequence AnnotationPhenotypeProtein DomainsSeverity of Illness IndexSoftwareVoltage-Gated Sodium ChannelsWeb BrowserVoltage-Gated Sodium Channelsclinical interpretation of variantsdatabasesgenetics variantspathogenicityphenotypevoltage-gated sodium channel

Identifiers

PMID28168870
PMCPMC5413847
OpenAlexW2594625441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.