Evidence map›Paper›PMID 28168297›Full record

ArticleNucleic acids research2017

Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae.

Kyle Mohler, Rebecca Mann, Tammy J Bullwinkle, Kyle Hopkins, Lin Hwang, Noah M Reynolds, Brandon Gassaway, Hans-Rudolf Aerni, Jesse Rinehart, Michael Polymenis and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Natural human tRNARNA (New York, N.Y.) · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Aminoacyl-tRNA synthetases.RNA (New York, N.Y.) · 2020
    Review
  11. The mechanism of β-The Journal of biological chemistry · 2020
    Article
  12. A Synthetic Reporter for Probing Mistranslation in Living Cells.Frontiers in bioengineering and biotechnology · 2020
    Article
  13. Loss of protein synthesis quality control in host-restricted organisms.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Kyle MohlerDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
Rebecca MannDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
Tammy J BullwinkleDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
Kyle HopkinsDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
Lin HwangPasarow Mass Spectrometry Laboratory, Semel Institute of Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, 760 Westwood Plaza, Los Angeles, CA 90024, USA.
Noah M ReynoldsDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
Brandon GassawayDepartment of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Hans-Rudolf AerniDepartment of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Jesse RinehartDepartment of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Michael PolymenisBiochemistry and Biophysics, Texas A&M University, Rm 333, 2128 TAMU, College Station, TX 77843, USA.
Kym FaullPasarow Mass Spectrometry Laboratory, Semel Institute of Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, 760 Westwood Plaza, Los Angeles, CA 90024, USA.
Michael IbbaDepartment of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, OH 43210, USA.
The Ohio State University · USYale University · USTexas A&M University · US

Funding

Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
A Systems Biology Approach for Targeted Drug Discovery for LeishmaniasisR21AI127582 · NIAID · OHIO STATE UNIVERSITY · PI IBBA, MICHAEL, SATOSKAR, ABHAY R · 2017 to 2018
$401k
NIAID NIH HHS R21 AI127582NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

Amino acid starvation activates the protein kinase Gcn2p, leading to changes in gene expression and translation. Gcn2p is activated by deacylated tRNA, which accumulates when tRNA aminoacylation is limited by lack of substrates or inhibition of synthesis. Pairing of amino acids and deacylated tRNAs is catalyzed by aminoacyl-tRNA synthetases, which use quality control pathways to maintain substrate specificity. Phenylalanyl-tRNA synthetase (PheRS) maintains specificity via an editing pathway that targets non-cognate Tyr-tRNAPhe. While the primary role of aaRS editing is to prevent misaminoacylation, we demonstrate editing of misaminoacylated tRNA is also required for detection of amino acid starvation by Gcn2p. Ablation of PheRS editing caused accumulation of Tyr-tRNAPhe (5%), but not deacylated tRNAPhe during amino acid starvation, limiting Gcn2p kinase activity and suppressing Gcn4p-dependent gene expression. While the PheRS-editing ablated strain grew 50% slower and displayed a 27-fold increase in the rate of mistranslation of Phe codons as Tyr compared to wild type, the increase in mistranslation was insufficient to activate an unfolded protein stress response. These findings show that during amino acid starvation a primary role of aaRS quality control is to help the cell mount an effective stress response, independent of the role of editing in maintaining translational accuracy.

Indexed as

RNA EditingTransfer RNA AminoacylationUnfolded Protein ResponseAmino AcidsPhenylalaninePhenylalanine-tRNA LigaseRNA, Transfer, Amino AcylRNA, Transfer, PheSaccharomyces cerevisiaeStress, PhysiologicalTyrosineAmino AcidsPhenylalaninePhenylalanine-tRNA LigaseRNA, Transfer, Amino AcylRNA, Transfer, PheTyrosine

Identifiers

PMID28168297
PMCPMC5397148
OpenAlexW2587691862

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.