Evidence map›Paper›PMID 28167536›Full record

ArticleThe Journal of biological chemistry2017

The Crystal Structure of Cytochrome P450 4B1 (CYP4B1) Monooxygenase Complexed with Octane Discloses Several Structural Adaptations for ω-Hydroxylation.

Mei-Hui Hsu, Brian R Baer, Allan E Rettie, Eric F Johnson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Spotlight on CYP4B1.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Review
  13. Article
  14. New Proluciferin Substrates for Human CYP4 Family Enzymes.Applied biochemistry and biotechnology · 2021
    Article
  15. Article
  16. Article
  17. The Biosynthesis of Enzymatically Oxidized Lipids.Frontiers in endocrinology · 2020
    Review
  18. Review
  19. Article
  20. Cytochrome P450 research andThe Journal of biological chemistry · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Mei-Hui HsuFrom the Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 and.
Brian R Baerthe Department of Medicinal Chemistry, University of Washington, Seattle, Washington 98195.
Allan E Rettiethe Department of Medicinal Chemistry, University of Washington, Seattle, Washington 98195.
Eric F JohnsonFrom the Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 and johnson@scripps.edu.ORCID 0000-0001-9028-4251
Scripps Research Institute · USUniversity of Washington · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
CYTOCHROME P450 POLYMORPHISMR01GM031001 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, ERIC F · 1985 to 2022
$16.2M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
MECHANISMS OF P450 DEPENDENT DESATURATIONR01GM049054 · NIGMS · UNIVERSITY OF WASHINGTON · PI RETTIE, ALLAN EDWARD · 1994 to 2010
$2.9M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM031001NIGMS NIH HHS R01 GM049054NIGMS NIH HHS T32 GM007750
6 · The paper itself

Abstract

P450 family 4 fatty acid ω-hydroxylases preferentially oxygenate primary C-H bonds over adjacent, energetically favored secondary C-H bonds, but the mechanism explaining this intriguing preference is unclear. To this end, the structure of rabbit P450 4B1 complexed with its substrate octane was determined by X-ray crystallography to define features of the active site that contribute to a preference for ω-hydroxylation. The structure indicated that octane is bound in a narrow active-site cavity that limits access of the secondary C-H bond to the reactive intermediate. A highly conserved sequence motif on helix I contributes to positioning the terminal carbon of octane for ω-hydroxylation. Glu-310 of this motif auto-catalytically forms an ester bond with the heme 5-methyl, and the immobilized Glu-310 contributes to substrate positioning. The preference for ω-hydroxylation was decreased in an E310A mutant having a shorter side chain, but the overall rates of metabolism were retained. E310D and E310Q substitutions having longer side chains exhibit lower overall rates, likely due to higher conformational entropy for these residues, but they retained high preferences for octane ω-hydroxylation. Sequence comparisons indicated that active-site residues constraining octane for ω-hydroxylation are conserved in family 4 P450s. Moreover, the heme 7-propionate is positioned in the active site and provides additional restraints on substrate binding. In conclusion, P450 4B1 exhibits structural adaptations for ω-hydroxylation that include changes in the conformation of the heme and changes in a highly conserved helix I motif that is associated with selective oxygenation of unactivated primary C-H bonds.

Indexed as

Conserved SequenceAnimalsAryl Hydrocarbon HydroxylasesBinding SitesCrystallography, X-RayHemeHydroxylationOctanesProtein ConformationRabbitsStructure-Activity RelationshipSubstrate SpecificityAryl Hydrocarbon Hydroxylasescytochrome P-450 CYP4B1HemeoctaneOctanescytochrome P450enzyme structurefatty acid metabolismhememembrane proteinxenobioticX-ray crystallography

Identifiers

PMID28167536
PMCPMC5392703
OpenAlexW2586777486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.