ArticleJournal of microbiological methods2017
Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet.
Article in Journal of microbiological methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
22 citing papers in PubMed, 40 citations in OpenAlex.
- Review
- Species- and Level-Dependent Modulation of Growth and Skin and Intestinal Mucosal Microbiota in Rainbow Trout Fed Mushroom Stem Meals.Aquaculture nutrition · 2026Article
- Mushroom stem-based diets elicit region-specific shifts in rainbow trout gut microbiota.Scientific reports · 2025Article
- A Bacterial-Sourced Protein Diet Induces Beneficial Shifts in the Gut Microbiome of the Zebrafish,Current developments in nutrition · 2024Article
- Fish gut microbiome and its application in aquaculture and biological conservation.Frontiers in microbiology · 2024Review
- Body Metrics and the Gut Microbiome in Response to Macronutrient Limitation in the ZebrafishCurrent developments in nutrition · 2023Article
- Microbiome analysis reveals potential for modulation of gut microbiota through polysaccharide-based prebiotic feeding inFrontiers in physiology · 2023Article
- Application of zebrafish in the study of the gut microbiome.Animal models and experimental medicine · 2022Review
- Point-of-use carbon-block drinking water filters change gut microbiome of larval zebrafish.Environmental microbiology reports · 2022Article
- Bee pollen in zebrafish diet affects intestinal microbiota composition and skin cutaneous melanoma development.Scientific reports · 2022Article
- Research Progress of the Gut Microbiome in Hybrid Fish.Microorganisms · 2022Review
- The Function and the Affecting Factors of the Zebrafish Gut Microbiota.Frontiers in microbiology · 2022Review
- Taxonomic and Functional Characteristics of the Gill and Gastrointestinal Microbiota and Its Correlation with Intestinal Metabolites in NEW GIFT Strain of Farmed Adult Nile Tilapia (Microorganisms · 2021Article
- Cross-Talk Between Intestinal Microbiota and Host Gene Expression in Gilthead Sea Bream (Frontiers in physiology · 2021Article
- Probiotic Yeasts andFrontiers in microbiology · 2021Article
- Metabarcoding Analyses of Gut Microbiota of Nile Tilapia (Microorganisms · 2020Article
- Zebrafish (Danio rerio) physiological and behavioural responses to insect-based diets: a multidisciplinary approach.Scientific reports · 2020Article
- Evidence for host effect on the intestinal microbiota of whitefish (Ecology and evolution · 2019Article
- Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides).MicrobiologyOpen · 2019Article
- Fish Gut Microbiome: Current Approaches and Future Perspectives.Indian journal of microbiology · 2018Article
Corrections and comments
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Authors and funding
10 authors at 1 institution in 1 country.
Funding
Abstract
In this study, we report the gut microbial composition and predictive functional profiles of zebrafish, Danio rerio, fed with a control formulated diet (CFD), and a gluten formulated diet (GFD) using a metagenomics approach and bioinformatics tools. The microbial communities of the GFD-fed D. rerio displayed heightened abundances of Legionellales, Rhizobiaceae, and Rhodobacter, as compared to the CFD-fed counterparts. Predicted metagenomics of microbial communities (PICRUSt) in GFD-fed D. rerio showed KEGG functional categories corresponding to bile secretion, secondary bile acid biosynthesis, and the metabolism of glycine, serine, and threonine. The CFD-fed D. rerio exhibited KEGG functional categories of bacteria-mediated cobalamin biosynthesis, which was supported by the presence of cobalamin synthesizers such as Bacteroides and Lactobacillus. Though these bacteria were absent in GFD-fed D. rerio, a comparable level of the cobalamin biosynthesis KEGG functional category was observed, which could be contributed by the compensatory enrichment of Cetobacterium. Based on these results, we conclude D. rerio to be a suitable alternative animal model for the use of a targeted metagenomics approach along with bioinformatics tools to further investigate the relationship between the gluten diet and microbiome profile in the gut ecosystem leading to gastrointestinal diseases and other undesired adverse health effects.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.