Evidence map›Paper›PMID 28166858›Full record

ArticleEpidemiology and infection2017

Genetic diversity of Mycobacterium avium complex strains isolated in Argentina by MIRU-VNTR.

B R Imperiale, R D Moyano, A B DI Giulio, M A Romero, M F Alvarado Pinedo, M P Santangelo, G E Travería, N S Morcillo, M I Romano

Open access · bronzeAbstract read
In one paragraph

Article in Epidemiology and infection, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. High Molecular Diversity ofInternational journal of molecular sciences · 2025
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  8. Unique genomic sequences in a novelOne health (Amsterdam, Netherlands) · 2023
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  9. Strain diversity inFrontiers in veterinary science · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Differential Genotyping ofMicroorganisms · 2020
    Review
  14. Genotyping methods and molecular epidemiology ofInternational journal of veterinary science and medicine · 2018
    Review
  15. Genetic diversity of bovineJournal of veterinary science · 2018
    Article
  16. Clustering and recent transmission ofInfection and drug resistance · 2018
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

B R ImperialeBiotechnology Institute, CICVyA INTA,Hurlingham, Buenos Aires Province,Argentina.
R D MoyanoBiotechnology Institute, CICVyA INTA,Hurlingham, Buenos Aires Province,Argentina.
A B DI GiulioMycobacteria Laboratory,Dr. Petrona V. de Cordero Hospital,San Fernando, Buenos Aires Province,Argentina.
M A RomeroCEDIVE, Faculty of Veterinary Sciences, UNLP,Argentina.
M F Alvarado PinedoCEDIVE, Faculty of Veterinary Sciences, UNLP,Argentina.
M P SantangeloBiotechnology Institute, CICVyA INTA,Hurlingham, Buenos Aires Province,Argentina.
G E TraveríaCEDIVE, Faculty of Veterinary Sciences, UNLP,Argentina.
N S MorcilloReference Laboratory of Tuberculosis Control Programme,Dr Cetrangolo Hospital,Florida, Buenos Aires Province,Argentina.
M I RomanoBiotechnology Institute, CICVyA INTA,Hurlingham, Buenos Aires Province,Argentina.
Centro Científico Tecnológico - San Juan · ARNational Agricultural Technology Institute · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium avium sp. avium (MAA), M. avium sp. hominissuis (MAH), and M. avium sp. paratuberculosis (MAP) are the main members of the M. avium complex (MAC) causing diseases in several hosts. The aim of this study was to describe the genetic diversity of MAC isolated from different hosts. Twenty-six MAH and 61 MAP isolates were recovered from humans and cattle, respectively. GenoType CM® and IS1311-PCR were used to identify Mycobacterium species. The IS901-PCR was used to differentiate between MAH and MAA, while IS900-PCR was used to identify MAP. Genotyping was performed using a mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) scheme (loci: 292, X3, 25, 47, 3, 7, 10, 32) and patterns (INMV) were assigned according to the MAC-INMV database (http://mac-inmv.tours.inra.fr/). Twenty-two (22/26, 84·6%) MAH isolates were genotyped and 16 were grouped into the following, INMV 92, INMV 121, INMV 97, INMV 103, INMV 50, and INMV 40. The loci X3 and 25 showed the largest diversity (D: 0·5844), and the global discriminatory index (Hunter and Gaston discriminatory index, HGDI) was 0·9300. MAP (100%) isolates were grouped into INMV 1, INMV 2, INMV 11, INMV 8, and INMV 5. The HGDI was 0·6984 and loci 292 and 7 had the largest D (0·6980 and 0·5050). MAH presented a higher D when compared with MAP. The MIRU-VNTR was a useful tool to describe the genetic diversity of both MAH and MAP as well as to identify six new MAH patterns that were conveniently reported to the MAC-INMV database. It was also demonstrated that, in the geographical region studied, human MAC cases were produced by MAH as there was no MAA found among the human clinical samples.

Indexed as

Genetic VariationGenotypeAnimalsArgentinaCattleHumansMycobacterium avium ComplexMycobacterium avium-intracellulare InfectionParatuberculosisPhylogenyPolymerase Chain ReactionSequence Analysis, DNATuberculosis, BovineDiversityMIRU-VNTRMycobacterium avium complex

Identifiers

PMID28166858
PMCPMC9203322
OpenAlexW2586673544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.