Evidence map›Paper›PMID 28165486›Full record

ArticleScientific reports2017

Alcohol and nicotine codependence-associated DNA methylation changes in promoter regions of addiction-related genes.

Hongqin Xu, Fan Wang, Henry R Kranzler, Joel Gelernter, Huiping Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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  12. Epigenomes in Cardiovascular Disease.Circulation research · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hongqin XuDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Fan WangDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Henry R KranzlerDepartment of Psychiatry, University of Pennsylvania Perelman School of Medicine and VISN4 MIRECC, Crescenz VAMC, Philadelphia, PA, USA.
Joel GelernterDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
Huiping ZhangDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA.
VA Connecticut Healthcare System · USYale University · USMental Illness Research, Education and Clinical Centers · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Translational Technologies CoreP50AA012870 · NIAAA · YALE UNIVERSITY · PI John H. Krystal · 2001 to 2026
$43.7M
Sex-specific analysis of opioid dependence GWAS and beyondR01DA012690 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2017
$14.0M
Genetics of Alcohol Dependence in African-AmericansR01AA017535 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2009 to 2013
$3.0M
Brain microRNA-mRNA regulatory networks and alcohol use disordersR01AA025080 · NIAAA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2016 to 2020
$1.7M
Association and Function of Opioid Receptor Gene Variants to Substance DependenceR00DA022891 · NIDA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2009 to 2011
$792k
Salivary MicroRNAs as Biomarkers for Alcohol DependenceR21AA023068 · NIAAA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2015 to 2016
$344k
Association and Function of Opioid Receptor Gene Variants to Substance DependenceK99DA022891 · NIDA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2007 to 2008
$176k
NCATS NIH HHS UL1 TR001863NIAAA NIH HHS P50 AA012870NIAAA NIH HHS R01 AA017535NIAAA NIH HHS R01 AA025080NIAAA NIH HHS R21 AA023068NIDA NIH HHS K99 DA022891NIDA NIH HHS R00 DA022891NIDA NIH HHS R01 DA012690
6 · The paper itself

Abstract

Altered DNA methylation in addiction-related genes may modify the susceptibility to alcohol or drug dependence (AD or ND). We profiled peripheral blood DNA methylation levels of 384 CpGs in promoter regions of 82 addiction-related genes in 256 African Americans (AAs) (117 cases with AD-ND codependence and 139 controls) and 196 European Americans (103 cases with AD-ND codependence and 93 controls) using Illumina's GoldenGate DNA methylation array assays. AD-ND codependence-associated DNA methylation changes were analyzed using linear mixed-effects models with consideration of batch effects and covariates age, sex, and ancestry proportions. Seventy CpGs (in 41 genes) showed nominally significant associations (P < 0.05) with AD-ND codependence in both AAs and EAs. One CpG (HTR2B cg27531267) was hypomethylated in AA cases (P = 7.2 × 10

Indexed as

Promoter Regions, GeneticAlcoholismAllelesCase-Control StudiesCodependency, PsychologicalComputational BiologyCpG IslandsDNA MethylationFemaleHistonesHumansMaleNicotinePolymorphism, Single NucleotideReceptor, Serotonin, 5-HT2BSubstance-Related DisordersHistonesHTR2B protein, humanNicotineReceptor, Serotonin, 5-HT2B

Identifiers

PMID28165486
PMCPMC5292964
OpenAlexW2586323919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.