Evidence map›Paper›PMID 28165030›Full record

ArticleScientific reports2017

Structural analysis and evolution of specificity of the SUMO UFD E1-E2 interactions.

Bing Liu, L Maria Lois, David Reverter

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. SUMO conjugating enzyme: a vital player of SUMO pathway in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Review
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bing LiuInstitut de Biotecnologia i de Biomedicina, Departament de Bioquimica i Biologia Molecular, Serra Hunter Fellow, Universitat Autonoma de Barcelona, 08193 Barcelona, Bellaterra, Spain.
L Maria LoisCenter for Research in Agricultural Genomics-CRAG, Edifici CRAG-Campus UAB, Bellaterra 08193 Barcelona, Spain.
David ReverterInstitut de Biotecnologia i de Biomedicina, Departament de Bioquimica i Biologia Molecular, Serra Hunter Fellow, Universitat Autonoma de Barcelona, 08193 Barcelona, Bellaterra, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SUMO belongs to the ubiquitin-like family (UbL) of protein modifiers. SUMO is conserved among eukaryotes and is essential for the regulation of processes such as DNA damage repair, transcription, DNA replication and mitosis. UbL modification of proteins occurs via a specific enzymatic cascade formed by the crosstalk between the E1-activating enzyme, the E2-conjugating enzyme and the E3-ligase. An essential discrimination step in all UbL modifiers corresponds to the interaction between E1 and E2 enzymes, which is mediated by the recruitment of the E2 to the UFD domain (Ubiquitin-Fold Domain) of the E1 enzyme. To gain insights in the properties of this interface, we have compared the structures of the complexes between E1 UFD domain and E2 in human and yeast, revealing two alternative UFD platforms that interact with a conserved E2. Comparative sequence analysis of the E1 UFD domain indicates that the E2 binding region has been conserved across phylogenetic closely related species, in which higher sequence conservation can be found in the E2 binding region than in the entire UFD domain. These distinctive strategies for E1-E2 interactions through the UFD domain might be the consequence of a high selective pressure to ensure specificity of each modifier conjugation system.

Indexed as

Evolution, MolecularAmino Acid SequenceCatalysisCrystallography, X-RayHumansPhylogenyProtein BindingProtein ConformationSaccharomyces cerevisiaeSequence HomologySmall Ubiquitin-Related Modifier ProteinsUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9Small Ubiquitin-Related Modifier ProteinsUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9

Identifiers

PMID28165030
PMCPMC5292753

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.