Evidence map›Paper›PMID 28163590›Full record

ArticleBreeding science2016

Development of genome-wide PCR-based markers from insertion, deletion and single nucleotide polymorphisms for closely related Japanese rice cultivars and identification of QTLs for the appearance of cooked rice and polished rice.

Noriko Kinoshita, Sho Takano, Naomi Shimoda, Itsuro Takamure, Takashi Sato, Kiyoaki Kato

Abstract read
In one paragraph

Article in Breeding science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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  3. TheBreeding science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Noriko KinoshitaDepartment of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine , Nishi 2-11 Inada, Obihiro, Hokkaido 080-8555 , Japan.
Sho TakanoDepartment of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine , Nishi 2-11 Inada, Obihiro, Hokkaido 080-8555 , Japan.
Naomi ShimodaDepartment of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine , Nishi 2-11 Inada, Obihiro, Hokkaido 080-8555 , Japan.
Itsuro TakamureGraduate School of Agriculture, Hokkaido University , Kita 9 Nishi 9, Kita-ku, Sapporo, Hokkaido 060-8589 , Japan.
Takashi SatoRice Breeding Group, Kamikawa Agricultural Experiment Station, Local Independent Administrative Agency Hokkaido Research Organization , Minami 1-5, Pippu, Hokkaido 078-0397 , Japan.
Kiyoaki KatoDepartment of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine , Nishi 2-11 Inada, Obihiro, Hokkaido 080-8555 , Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Appearance of rice grain is an important property, affecting its acceptance by consumers. Moreover, appearance is a complex characteristic involving many components, including glossiness and whiteness. The genetic bases for the glossiness of cooked rice and the whiteness of polished rice (WPR) were determined using 133 recombinant inbred lines (RILs) derived from a cross between two closely related cultivars from Hokkaido, Joiku462, with high glossiness and whiteness, and Yukihikari, an ancestor of Joiku462 with low glossiness and whiteness. Analyses identified 167 genome-wide InDel markers, five cleaved amplified polymorphic sequences (CAPS) and eight derived CAPS markers differentiating the parental lines. The glossiness area (GLA) and glossiness strength (GLS) of cooked rice and WPR were determined for RILs in two locations, Pippu and Sapporo, Hokkaido. Four QTLs were detected.

Indexed as

CAPS markerdCAPS markerglossinessInDel markerwhiteness

Identifiers

PMID28163590
PMCPMC5282762

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.