Evidence map›Paper›PMID 28159892›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Systematic identification of anti-interferon function on hepatitis C virus genome reveals p7 as an immune evasion protein.

Hangfei Qi, Virginia Chu, Nicholas C Wu, Zugen Chen, Shawna Truong, Gurpreet Brar, Sheng-Yao Su, Yushen Du, Vaithilingaraja Arumugaswami, C Anders Olson and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Hangfei QiDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Virginia ChuDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.
Nicholas C WuMolecular Biology Institute, University of California, Los Angeles, CA 90095.
Zugen ChenDepartment of Human Genetics, University of California, Los Angeles, CA 90095.
Shawna TruongDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.
Gurpreet BrarDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Sheng-Yao SuInstitute of Biomedical Informatics, National Yang-Ming University, Taipei, 112 Taiwan.
Yushen DuDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Vaithilingaraja ArumugaswamiDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.ORCID 0000-0002-6872-5118
C Anders OlsonDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Shu-Hua ChenInstitute of Information Science, Academia Sinica, Taipei, 115 Taiwan.
Chung-Yen LinInstitute of Information Science, Academia Sinica, Taipei, 115 Taiwan.
Ting-Ting WuDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095.
Ren SunDepartment of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095; rsun@mednet.ucla.edu.
University of California, Los Angeles · USInstitute of Information Science, Academia Sinica · TWNational Yang Ming Chiao Tung University · TW

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTON, PETER A · 1991 to 2018
$39.9M
Interdisciplinary Training in Virology and Gene TherapyT32AI060567 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WU, TING-TING · 2004 to 2018
$3.4M
Quantitative High-Resolution Genetic Profiling of a GammaherpesvirusR21AI078133 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUN, REN · 2010 to 2011
$422k
NCI NIH HHS P30 CA016042NIAID NIH HHS P30 AI028697NIAID NIH HHS R21 AI078133NIAID NIH HHS T32 AI060567
6 · The paper itself

Abstract

Hepatitis C virus (HCV) encodes mechanisms to evade the multilayered antiviral actions of the host immune system. Great progress has been made in elucidating the strategies HCV employs to down-regulate interferon (IFN) production, impede IFN signaling transduction, and impair IFN-stimulated gene (ISG) expression. However, there is a limited understanding of the mechanisms governing how viral proteins counteract the antiviral functions of downstream IFN effectors due to the lack of an efficient approach to identify such interactions systematically. To study the mechanisms by which HCV antagonizes the IFN responses, we have developed a high-throughput profiling platform that enables mapping of HCV sequences critical for anti-IFN function at high resolution. Genome-wide profiling performed with a 15-nt insertion mutant library of HCV showed that mutations in the p7 region conferred high levels of IFN sensitivity, which could be alleviated by the expression of WT p7 protein. This finding suggests that p7 protein of HCV has an immune evasion function. By screening a liver-specific ISG library, we identified that IFI6-16 significantly inhibits the replication of p7 mutant viruses without affecting WT virus replication. In contrast, knockout of IFI6-16 reversed the IFN hypersensitivity of p7 mutant virus. In addition, p7 was found to be coimmunoprecipitated with IFI6-16 and to counteract the function of IFI6-16 by depolarizing the mitochondria potential. Our data suggest that p7 is a critical immune evasion protein that suppresses the antiviral IFN function by counteracting the function of IFI6-16.

Indexed as

Immune EvasionCell LineCRISPR-Cas SystemsGene Expression ProfilingGene Knockout TechniquesGene LibraryGenome, ViralHepacivirusHepatitis CHost-Pathogen InteractionsHumansImmunity, InnateInterferonsLiverMembrane Potential, MitochondrialMitochondrial ProteinsIFI6 protein, humanInterferonsMitochondrial Proteinsp7 protein, Hepatitis C virusViral ProteinsViroporin ProteinsHCVhigh-throughput mutagenesisIF6-16 antiviral functioninnate immune evasion mechanismp7 ion channel protein

Identifiers

PMID28159892
PMCPMC5338388
OpenAlexW2584795971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.