Evidence map›Paper›PMID 28159843›Full record

ArticleThe Journal of biological chemistry2017

Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases.

Anita Palma, Michele Tinti, Serena Paoluzi, Elena Santonico, Bernd Willem Brandt, Rob Hooft van Huijsduijnen, Antonia Masch, Jaap Heringa, Mike Schutkowski, Luisa Castagnoli and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Anita PalmaFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0002-5971-3676
Michele TintiFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.
Serena PaoluziFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.
Elena SantonicoFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.
Bernd Willem Brandtthe Centre for Integrative Bioinformatics, Vrije Universiteit, 1081 HV Amsterdam, The Netherlands, and.ORCID 0000-0001-9701-4190
Rob Hooft van Huijsduijnenthe Geneva Research Center, Merck Serono International, 1202 Geneva, Switzerland.ORCID 0000-0002-2261-9424
Antonia Maschthe Institut für Biochemie & Biotechnologie, Martin-Luther-Universität Halle-Wittenberg, 06108 Halle, Germany.
Jaap Heringathe Centre for Integrative Bioinformatics, Vrije Universiteit, 1081 HV Amsterdam, The Netherlands, and.ORCID 0000-0001-8641-4930
Mike Schutkowskithe Institut für Biochemie & Biotechnologie, Martin-Luther-Universität Halle-Wittenberg, 06108 Halle, Germany.
Luisa CastagnoliFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0001-5283-8671
Gianni CesareniFrom the Department of Biology, University of Rome Tor Vergata, 00133 Rome, Italy, cesareni@uniroma2.it.ORCID 0000-0002-9528-6018
University of Rome Tor Vergata · ITMartin Luther University Halle-Wittenberg · DEVrije Universiteit Amsterdam · NLMerck Serono (Switzerland) · CH

Funding

European Research Council 322749
6 · The paper itself

Abstract

Reversible tyrosine phosphorylation is a widespread post-translational modification mechanism underlying cell physiology. Thus, understanding the mechanisms responsible for substrate selection by kinases and phosphatases is central to our ability to model signal transduction at a system level. Classical protein-tyrosine phosphatases can exhibit substrate specificity

Indexed as

Amino Acid SequenceBayes TheoremBinding SitesHumansModels, BiologicalMolecular Docking SimulationPhosphopeptidesPhosphorylationProtein ConformationProtein DomainsProtein Interaction MapsProtein Tyrosine PhosphatasesSubstrate SpecificityPhosphopeptidesProtein Tyrosine PhosphatasesBayesian integrationpeptide arrayprotein-protein interactionrecognition specificitysubstrate specificitysystems biologytrapping mutantstyrosine-protein phosphatase (tyrosine phosphatase)

Identifiers

PMID28159843
PMCPMC5377807
OpenAlexW2583792968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.