Evidence map›Paper›PMID 28159835›Full record

ArticleGut2018

miR-135a-5p-mediated downregulation of protein tyrosine phosphatase receptor delta is a candidate driver of HCV-associated hepatocarcinogenesis.

Nicolaas Van Renne, Armando Andres Roca Suarez, Francois H T Duong, Claire Gondeau, Diego Calabrese, Nelly Fontaine, Amina Ababsa, Simonetta Bandiera, Tom Croonenborghs, Nathalie Pochet and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Gut, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Pooled it
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  13. Signaling Induced by Chronic Viral Hepatitis: Dependence and Consequences.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 4 countries.

Nicolaas Van RenneInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.ORCID 0000-0002-3053-8835
Armando Andres Roca SuarezInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.ORCID 0000-0002-2620-4461
Francois H T DuongDepartment of Biomedicine, Hepatology Laboratory, University of Basel, Basel, Switzerland.
Claire GondeauInserm, U1183, Institut de Médecine Régénératrice et Biothérapie, Université de Montpellier, Montpellier, France.
Diego CalabreseDepartment of Biomedicine, Hepatology Laboratory, University of Basel, Basel, Switzerland.ORCID 0000-0002-0259-8611
Nelly FontaineInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Amina AbabsaInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Simonetta BandieraInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Tom CroonenborghsThe Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA.
Nathalie PochetThe Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA.
Vito De BlasiInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Patrick PessauxInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.ORCID 0000-0001-5635-7437
Tullio PiardiDepartment of General, Digestive and Endocrine Surgery, Hôpital Robert Debré, Centre Hospitalier Universitaire de Reims, Université de Reims Champagne-Ardenne, Reims, France.
Daniele SommacaleDepartment of General, Digestive and Endocrine Surgery, Hôpital Robert Debré, Centre Hospitalier Universitaire de Reims, Université de Reims Champagne-Ardenne, Reims, France.
Atsushi OnoDivision of Liver Diseases, Department of Medicine, Liver Cancer Program, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Kazuaki ChayamaDepartment of Gastroenterology and Metabolism, Applied Life Sciences, Institute of Biomedical & Health Sciences, Hiroshima University, Hiroshima, Japan.
Masashi FujitaLaboratory for Genome Sequencing Analysis, RIKEN Center for Integrative Medical Sciences, Tokyo, Japan.
Hidewaki NakagawaLaboratory for Genome Sequencing Analysis, RIKEN Center for Integrative Medical Sciences, Tokyo, Japan.
Yujin HoshidaDivision of Liver Diseases, Department of Medicine, Liver Cancer Program, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Mirjam B ZeiselInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Markus H HeimDepartment of Biomedicine, Hepatology Laboratory, University of Basel, Basel, Switzerland.
Thomas F BaumertInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.
Joachim LupbergerInserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France.ORCID 0000-0003-3996-3907
Inserm · FRUniversity of Basel · CHBroad Institute · USCentre Hospitalier Universitaire de Reims · FRHiroshima University · JPRIKEN Center for Integrative Medical Sciences · JPIcahn School of Medicine at Mount Sinai · US

Funding

THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Deanna L Benson · 2015 to 2026
$35.4M
Molecular Prognostic Indicators in Liver Cirrhosis and CancerR01DK099558 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HOSHIDA, YUJIN · 2013 to 2016
$2.6M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
NIDDK NIH HHS R01 DK099558NIH HHS S10 OD018522
6 · The paper itself

Abstract

BACKGROUND AND

aimsHCV infection is a leading risk factor of hepatocellular carcinoma (HCC). However, even after viral clearance, HCC risk remains elevated. HCV perturbs host cell signalling to maintain infection, and derailed signalling circuitry is a key driver of carcinogenesis. Since protein phosphatases are regulators of signalling events, we aimed to identify phosphatases that respond to HCV infection with relevance for hepatocarcinogenesis.

methodsWe assessed mRNA and microRNA (miRNA) expression profiles in primary human hepatocytes, liver biopsies and resections of patients with HCC, and analysed microarray and RNA-seq data from paired liver biopsies of patients with HCC. We revealed changes in transcriptional networks through gene set enrichment analysis and correlated phosphatase expression levels to patient survival and tumour recurrence.

resultsWe demonstrate that tumour suppressor protein tyrosine phosphatase receptor delta (PTPRD) is impaired by HCV infection in vivo and in HCC lesions of paired liver biopsies independent from tissue inflammation or fibrosis. In liver tissue adjacent to tumour, high PTPRD levels are associated with a dampened transcriptional activity of STAT3, an increase of patient survival from HCC and reduced tumour recurrence after surgical resection. We identified miR-135a-5p as a mechanistic regulator of hepatic PTPRD expression in patients with HCV.

conclusionsWe previously demonstrated that STAT3 is required for HCV infection. We conclude that HCV promotes a STAT3 transcriptional programme in the liver of patients by suppressing its regulator PTPRD via upregulation of miR-135a-5p. Our results show the existence of a perturbed PTPRD-STAT3 axis potentially driving malignant progression of HCV-associated liver disease.

Indexed as

AdultAgedAged, 80 and overBlotting, WesternCarcinogenesisCarcinoma, HepatocellularDown-RegulationFemaleHepacivirusHepatitis CHepatocytesHumansIn Situ Hybridization, FluorescenceLiverLiver NeoplasmsMaleMicroRNAsMIRN135 microRNA, humanPTPRD protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 2RNA, MessengerSTAT3 protein, humanSTAT3 Transcription FactorHCVHEPATOCELLULAR CARCINOMASIGNALING

Identifiers

PMID28159835
PMCPMC5540823
OpenAlexW2585171456

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.