Evidence map›Paper›PMID 28158851›Full record

ArticleNucleic acids research2017

p27Kip1, PCAF and PAX5 cooperate in the transcriptional regulation of specific target genes.

Anna Perearnau, Serena Orlando, Abul B M M K Islam, Edurne Gallastegui, Jonatan Martínez, Albert Jordan, Anna Bigas, Rosa Aligué, Maria Jesús Pujol, Oriol Bachs

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. p27Cells · 2021
    Review
  11. The CDK inhibitor p57Scientific reports · 2020
    Article
  12. Article
  13. Role of p27Oncotarget · 2018
    Review
  14. p27Oncotarget · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Anna PerearnauDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Serena OrlandoDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Abul B M M K IslamDepartment of Genetic Engineering and Biotechnology University of Dhaka, Dhaka 1000, Bangladesh.
Edurne GallasteguiDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Jonatan MartínezDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Albert JordanDepartment of Molecular Genomics, Molecular Biology Institute of Barcelona (IBMB), Consejo Superior de Investigaciones Científicas (CSIC), 08029 Barcelona, Spain.
Anna BigasProgram in Cancer Research, Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), CIBERONC, 08003 Barcelona, Spain.
Rosa AliguéDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Maria Jesús PujolDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Oriol BachsDepartment of Biomedical Sciences, University of Barcelona-IDIBAPS, CIBERONC, 08036 Barcelona, Spain.
Centro de Investigación Biomédica en Red de Cáncer · ESConsejo Superior de Investigaciones Científicas · ESHospital del Mar Research Institute · ESUniversity of Dhaka · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cyclin-dependent kinase inhibitor p27Kip1 (p27) also behaves as a transcriptional repressor. Data showing that the p300/CBP-associated factor (PCAF) acetylates p27 inducing its degradation suggested that PCAF and p27 could collaborate in the regulation of transcription. However, this possibility remained to be explored. We analyzed here the transcriptional programs regulated by PCAF and p27 in the colon cancer cell line HCT116 by chromatin immunoprecipitation sequencing (ChIP-seq). We identified 269 protein-encoding genes that contain both p27 and PCAF binding sites being the majority of these sites different for PCAF and p27. PCAF or p27 knock down revealed that both regulate the expression of these genes, PCAF as an activator and p27 as a repressor. The double knock down of PCAF and p27 strongly reduced their expression indicating that the activating role of PCAF overrides the repressive effect of p27. We also observed that the transcription factor Pax5 interacts with both p27 and PCAF and that the knock down of Pax5 induces the expression of p27/PCAF target genes indicating that it also participates in the transcriptional regulation mediated by p27/PCAF. In summary, we report here a previously unknown mechanism of transcriptional regulation mediated by p27, Pax5 and PCAF.

Indexed as

Gene Expression RegulationAnimalsBinding SitesCell Line, TumorCells, CulturedChromatinCyclin-Dependent Kinase Inhibitor p27HCT116 CellsHumansMCF-7 CellsMicep300-CBP-Associated Factorp300-CBP Transcription FactorsPAX5 Transcription FactorProtein BindingProteinsCDKN1B protein, humanChromatinCyclin-Dependent Kinase Inhibitor p27p300-CBP-Associated Factorp300-CBP Transcription FactorsPAX5 protein, humanPAX5 Transcription FactorProteins

Identifiers

PMID28158851
PMCPMC5435914
OpenAlexW2584337477

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.