Evidence map›Paper›PMID 28158719›Full record

ArticleHuman molecular genetics2017

Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.

Deepti Jain, Chani J Hodonsky, Ursula M Schick, Jean V Morrison, Sharon Minnerath, Lisa Brown, Claudia Schurmann, Yongmei Liu, Paul L Auer, Cecelia A Laurie and 11 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Influence of tissue context on gene prioritization for predicted transcriptome-wide association studies.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2019
    Trial
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  15. Immunological and psychosocial functioning in parents of children with cancer.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2022
    Article
  16. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 10 institutions in 1 country.

Deepti JainDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Chani J HodonskyDepartment of Epidemiology, University of North Carolina Gillings School of Public Health, Chapel Hill, NC 27514, USA.
Ursula M SchickThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Jean V MorrisonDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Sharon MinnerathDepartment of Lab Medicine and Pathology, University of Minnesota, Minneapolis, MN 55455, USA.
Lisa BrownDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Claudia SchurmannThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Yongmei LiuDepartment of Epidemiology and Prevention, School of Medicine, Wake Forest University, Winston-Salem, NC 27101, USA.
Paul L AuerDepartment of Biostatistics, Joseph J. Zilber School of Public Health, University of Wisconsin Milwaukee, Milwaukee, WI 53201, USA.
Cecelia A LaurieDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Kent D TaylorInstitute for Translational Genomics and Population Sciences at Harbor-UCLA Medical Center, Torrance, CA 90502, USA.
Brian L BrowningDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
George PapanicolaouDivision of Cardiovascular Sciences, National Heart, Lung and Blood Institute, Bethesda, MD 20824, USA.
Sharon R BrowningDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Ruth J F LoosThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Kari E NorthDepartment of Epidemiology, University of North Carolina Gillings School of Public Health, Chapel Hill, NC 27514, USA.
Bharat ThyagarajanDepartment of Lab Medicine and Pathology, University of Minnesota, Minneapolis, MN 55455, USA.
Cathy C LaurieDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Timothy A ThorntonDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Tamar SoferDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Alexander P ReinerDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98195, USA.
University of Washington · USFred Hutch Cancer Center · USUniversity of Minnesota · USUniversity of North Carolina at Chapel Hill · USChild Health and Development Institute · USIcahn School of Medicine at Mount Sinai · USNational Heart Lung and Blood Institute · USThe Lundquist Institute · USUniversity of Wisconsin–Milwaukee · USWake Forest University · US

Funding

UCLA Clinical Translational Science InstituteUL1TR001881 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARLEEN F. BROWN, ARASH NAEIM · 2016 to 2026
$118.1M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Clinical and Translational Science Coordinating CenterU54TR000123 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2017
$14.2M
Statistical Methods for X-Chromosome Genetic DataP01GM099568 · NIGMS · UNIVERSITY OF WASHINGTON · PI THORNTON, TIMOTHY ALVIN · 2012 to 2016
$7.3M
Diverse ancestry biobank to map biomedical traits and elucidate health disparitieU01HG007417 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI LOOS, RUTH JF · 2013 to 2017
$3.5M
Genetic Studies of Blood Cell Traits in Multi-Ethnic CohortsR01HL129132 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, YUN, REINER, ALEXANDER P · 2016 to 2019
$2.7M
Thalassemia Clinical Research Network, CanadaU01HL065233 · NHLBI · UNIVERSITY HEALTH NETWORK · PI OLIVIERI, NANCY F · 2000 to 2009
$2.6M
Identification and interpretation of introgressed hominin DNA in modern human genomesR01GM110068 · NIGMS · UNIVERSITY OF WASHINGTON · PI AKEY, JOSHUA MICHAEL · 2014 to 2024
$2.6M
Predoctoral Research Training in Statistical Genetics Administrative SupplementT32GM081062 · NIGMS · UNIVERSITY OF WASHINGTON · PI THORNTON, TIMOTHY ALVIN · 2007 to 2021
$2.4M
Leveraging ancestral diversity to map adiposity loci in HispanicsR01DK101855 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAIMAN, CHRISTOPHER ALAN, LOOS, RUTH JF · 2014 to 2016
$2.1M
GENETIC ARCHITECTURE OF PLASMA T-PA AND PAI-1R01HL065234 · NHLBI · VANDERBILT UNIVERSITY · PI MOORE, JASON H. · 2000 to 2004
$1.7M
NCATS NIH HHS U54 TR000123NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR001881NHGRI NIH HHS U01 HG007417NHLBI NIH HHS HHSN268201300005CNHLBI NIH HHS N01 HC065233NHLBI NIH HHS N01 HC065234NHLBI NIH HHS N01 HC065235NHLBI NIH HHS N01 HC065236NHLBI NIH HHS N01 HC065237NHLBI NIH HHS R01 HL129132NIDDK NIH HHS K08 DK093705NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK101855NIGMS NIH HHS P01 GM099568NIGMS NIH HHS R01 GM110068NIGMS NIH HHS T32 GM081062
6 · The paper itself

Abstract

Circulating white blood cell (WBC) counts (neutrophils, monocytes, lymphocytes, eosinophils, basophils) differ by ethnicity. The genetic factors underlying basal WBC traits in Hispanics/Latinos are unknown. We performed a genome-wide association study of total WBC and differential counts in a large, ethnically diverse US population sample of Hispanics/Latinos ascertained by the Hispanic Community Health Study and Study of Latinos (HCHS/SOL). We demonstrate that several previously known WBC-associated genetic loci (e.g. the African Duffy antigen receptor for chemokines null variant for neutrophil count) are generalizable to WBC traits in Hispanics/Latinos. We identified and replicated common and rare germ-line variants at FLT3 (a gene often somatically mutated in leukemia) associated with monocyte count. The common FLT3 variant rs76428106 has a large allele frequency differential between African and non-African populations. We also identified several novel genetic loci involving or regulating hematopoietic transcription factors (CEBPE-SLC7A7, CEBPA and CRBN-TRNT1) associated with basophil count. The minor allele of the CEBPE variant associated with lower basophil count has been previously associated with Amerindian ancestry and higher risk of acute lymphoblastic leukemia in Hispanics. Together, these data suggest that germline genetic variation affecting transcriptional and signaling pathways that underlie WBC development and lineage specification can contribute to inter-individual as well as ethnic differences in peripheral blood cell counts (normal hematopoiesis) in addition to susceptibility to leukemia (malignant hematopoiesis).

Indexed as

Genome-Wide Association StudyLeukocyte CountBasophilsBlack or African AmericanCCAAT-Enhancer-Binding ProteinsFemalefms-Like Tyrosine Kinase 3Gene FrequencyHispanic or LatinoHumansLymphocytesMaleMonocytesNeutrophilsUnited StatesWhite PeopleCCAAT-Enhancer-Binding ProteinsCEBPE protein, humanFLT3 protein, humanfms-Like Tyrosine Kinase 3

Identifiers

PMID28158719
PMCPMC5968624
OpenAlexW2585900196

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.