Evidence map›Paper›PMID 28158620›Full record

ArticleNucleic acids research2017

Characterizing the effect of GalNAc and phosphorothioate backbone on binding of antisense oligonucleotides to the asialoglycoprotein receptor.

Karsten Schmidt, Thazha P Prakash, Aaron J Donner, Garth A Kinberger, Hans J Gaus, Audrey Low, Michael E Østergaard, Melanie Bell, Eric E Swayze, Punit P Seth

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Nucleic acid drugs: recent progress and future perspectives.Signal transduction and targeted therapy · 2024
    Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Ligand conjugate SAR and enhanced delivery in NHP.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Pharmacokinetics and Proceedings in Clinical Application of Nucleic Acid Therapeutics.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Karsten SchmidtIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Thazha P PrakashIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Aaron J DonnerIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Garth A KinbergerIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Hans J GausIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Audrey LowIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Michael E ØstergaardIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Melanie BellIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Eric E SwayzeIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Punit P SethIonis Pharmaceuticals Inc., 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Ionis Pharmaceuticals (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Targeted delivery of antisense oligonucleotides (ASO) to hepatocytes via the asialoglycoprotein receptor (ASGR) has improved the potency of ASO drugs ∼30-fold in the clinic (1). In order to fully characterize the effect of GalNAc valency, oligonucleotide length, flexibility and chemical composition on ASGR binding, we tested and validated a fluorescence polarization competition binding assay. The ASGR binding, and in vitro and in vivo activities of 1, 2 and 3 GalNAc conjugated single stranded and duplexed ASOs were studied. Two and three GalNAc conjugated single stranded ASOs bind the ASGR with the strongest affinity and display optimal in vitro and in vivo activities. 1 GalNAc conjugated ASOs showed 10-fold reduced ASGR binding affinity relative to three GalNAc ASOs but only 2-fold reduced activity in mice. An unexpected observation was that the ASGR also appears to play a role in the uptake of unconjugated phosphorothioate modified ASOs in the liver as evidenced by the loss of activity of GalNAc conjugated and unconjugated ASOs in ASGR knockout mice. Our results provide insights into how backbone charge and chemical composition assist in the binding and internalization of highly polar anionic single stranded oligonucleotides into cells and tissues.

Indexed as

Biological AssayAcetylgalactosamineAnimalsAsialoglycoprotein ReceptorBase SequenceBinding, CompetitiveBinding SitesBiological TransportDNADNA, Single-StrandedFluorescence PolarizationGlycoconjugatesHepatocytesHumansKineticsLiverAcetylgalactosamineAsialoglycoprotein ReceptorDNADNA, Single-StrandedGlycoconjugatesOligonucleotides, AntisensePhosphorothioate Oligonucleotides

Identifiers

PMID28158620
PMCPMC5389643
OpenAlexW2585287082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.