Evidence map›Paper›PMID 28158437›Full record

ArticleGenome biology and evolution2017

Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals).

Mei-Fang Lin, Aurelie Moya, Hua Ying, Chaolun Allen Chen, Ira Cooke, Eldon E Ball, Sylvain Forêt, David J Miller

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. Transcriptomics of theEcology and evolution · 2025
    Article
  2. The Evolution of Calcification in Reef-Building Corals.Molecular biology and evolution · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Mei-Fang LinComparative Genomics Centre, Department of Molecular and Cell Biology, James Cook University, Townsville, Queensland, Australia.
Aurelie MoyaARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia.
Hua YingResearch School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.
Chaolun Allen ChenBiodiversity Research Centre, Academia Sinica, Nangang, Taipei, Taiwan.
Ira CookeComparative Genomics Centre, Department of Molecular and Cell Biology, James Cook University, Townsville, Queensland, Australia.
Eldon E BallARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia.
Sylvain ForêtARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia.
David J MillerComparative Genomics Centre, Department of Molecular and Cell Biology, James Cook University, Townsville, Queensland, Australia.
James Cook University · AUAustralian National University · AUARC Centre of Excellence for Coral Reef Studies · AUBiodiversity Research Center, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corallimorpharians (coral-like anemones) have a close phylogenetic relationship with scleractinians (hard corals) and can potentially provide novel perspectives on the evolution of biomineralization within the anthozoan subclass Hexacorallia. A survey of the transcriptomes of three representative corallimorpharians led to the identification of homologs of some skeletal organic matrix proteins (SOMPs) previously considered to be restricted to corals.Carbonic anhydrases (CAs), which are ubiquitous proteins involved in CO2 trafficking, are involved in both coral calcification and photosynthesis by endosymbiotic Symbiodinium (zooxanthellae). These multiple roles are assumed to place increased demands on the CA repertoire and have presumably driven the elaboration of the complex CA repertoires typical of corals (note that "corals" are defined here as reef-building Scleractinia). Comparison of the CA inventories of corallimorpharians with those of corals reveals that corals have specifically expanded the secreted and membrane-associated type CAs, whereas similar complexity is observed in the two groups with respect to other CA types.Comparison of the CA complement of the nonsymbiotic corallimorph Corynactis australis with that of Ricordea yuma, a corallimorph which normally hosts Symbiodinium, reveals similar numbers and distribution of CA types and suggests that an expansion of the CA repertoire has been necessary to enable calcification but may not be a requirement to enable symbiosis. Consistent with this idea, preliminary analysis suggests that the CA complexity of zooxanthellate and nonzooxanthellate sea anemones is similar.The comparisons above suggest that although there are relatively few new genes in the skeletal organic matrix of corals (which controls the skeleton deposition process), the evolution of calcification required an expanded repertoire of secreted and membrane-associated CAs.

Indexed as

Biological EvolutionTranscriptomeAnimalsAnthozoaCalcification, PhysiologicCalciumPhylogenySequence Analysis, DNACalciumcarbonic anhydrasecoral calcificationcorallimorpharianmolecular evolutionskeletal organic matrix proteins

Identifiers

PMID28158437
PMCPMC5604590
OpenAlexW2585548792

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.