Evidence map›Paper›PMID 28158293›Full record

ArticlePloS one2017

Phosphorylated fraction of H2AX as a measurement for DNA damage in cancer cells and potential applications of a novel assay.

Jiuping Ji, Yiping Zhang, Christophe E Redon, William C Reinhold, Alice P Chen, Laura K Fogli, Susan L Holbeck, Ralph E Parchment, Melinda Hollingshead, Joseph E Tomaszewski and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
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  15. Monoubiquitination in Homeostasis and Cancer.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Jiuping JiApplied/Developmental Research Directorate, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Yiping ZhangApplied/Developmental Research Directorate, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Christophe E RedonDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
William C ReinholdDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
Alice P ChenEarly Clinical Trials Development Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, Maryland, United States of America.
Laura K FogliDivision of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, Maryland, United States of America.
Susan L HolbeckDivision of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, Maryland, United States of America.
Ralph E ParchmentApplied/Developmental Research Directorate, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Melinda HollingsheadDivision of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, Maryland, United States of America.
Joseph E TomaszewskiDivision of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, Maryland, United States of America.
Quentin DudonDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
Yves PommierDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
James H DoroshowDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
William M BonnerDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
National Cancer Institute · USCenter for Cancer Research · USLeidos (United States) · USFrederick National Laboratory for Cancer Research · US

Funding

Phase 01 Clinical TrialsZIABC011078 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DOROSHOW, JAMES · 2009 to 2025
$9.0M
6 · The paper itself

Abstract

Phosphorylated H2AX (γ-H2AX) is a sensitive marker for DNA double-strand breaks (DSBs), but the variability of H2AX expression in different cell and tissue types makes it difficult to interpret the meaning of the γ-H2AX level. Furthermore, the assays commonly used for γ-H2AX detection utilize laborious and low-throughput microscopy-based methods. We describe here an ELISA assay that measures both phosphorylated H2AX and total H2AX absolute amounts to determine the percentage of γ-H2AX, providing a normalized value representative of the amount of DNA damage. We demonstrate the utility of the assay to measure DSBs introduced by either ionizing radiation or DNA-damaging agents in cultured cells and in xenograft models. Furthermore, utilizing the NCI-60 cancer cell line panel, we show a correlation between the basal fraction of γ-H2AX and cellular mutation levels. This additional application highlights the ability of the assay to measure γ-H2AX levels in many extracts at once, making it possible to correlate findings with other cellular characteristics. Overall, the γ-H2AX ELISA represents a novel approach to quantifying DNA damage, which may lead to a better understanding of mutagenic pathways in cancer and provide a useful biomarker for monitoring the effectiveness of DNA-damaging anticancer agents.

Indexed as

AnimalsBiological AssayCell Line, TumorCisplatinDNA DamageEnzyme-Linked Immunosorbent AssayFemaleHistonesHumansMiceMice, NudeMutationPhosphorylationCisplatinHistones

Identifiers

PMID28158293
PMCPMC5291513
OpenAlexW2584824328

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.