Evidence map›Paper›PMID 28158271›Full record

ArticlePloS one2017

Genetic and antigenic evolution of H9N2 subtype avian influenza virus in domestic chickens in southwestern China, 2013-2016.

Jing Xia, Jia-Qi Cui, Xiao He, Yue-Yue Liu, Ke-Chang Yao, San-Jie Cao, Xin-Feng Han, Yong Huang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 49 citations in OpenAlex.

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  16. Avian influenza overview October 2016-August 2017.EFSA journal. European Food Safety Authority · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jing XiaCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Jia-Qi CuiCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Xiao HeCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Yue-Yue LiuCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Ke-Chang YaoCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
San-Jie CaoCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Xin-Feng HanCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Yong HuangCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, P. R. CHINA.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

H9N2 avian influenza virus (AIV) has caused significant losses in chicken flocks throughout china in recent years. There is a limited understanding of the genetic and antigenic characteristics of the H9N2 virus isolated in chickens in southwestern China. In this study a total of 12 field strains were isolated from tissue samples from diseased chickens between 2013 and 2016. Phylogenetic analysis of the Hemagglutinin (HA) and Neuraminidase (NA) nucleotide sequences from the 12 field isolates and other reference strains showed that most of the isolates in the past four years could be clustered into a major branch (HA-branch A and NA-branch I) in the Clade h9.4.2 lineages. These sequences are accompanied by nine and seven new amino acids mutations in the HA and NA proteins, respectively, when compared with those previous to 2013. In addition, four new isolates were grouped into a minor branch (HA-branch B) in the Clade h9.4.2 lineages and two potential N-glycosylation sites were observed due to amino acid mutations in the HA protein. Three antigenic groups (1-3), which had low antigenic relatedness with two commonly used vaccines in China, were identified among the 12 isolates by antigenMap analysis. Immunoprotection testing showed that those two vaccines could efficiently prevent the shedding of branch A viruses but not branch B viruses. In conclusion, these results indicate the genotype of branch B may become epidemic in the next few years and that a new vaccine should be developed for the prevention of H9N2 AIV.

Indexed as

ChickensEvolution, MolecularAnimalsAntigens, ViralChinaCross ReactionsHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsInfluenza VaccinesNeuraminidasePhylogenyPoultry DiseasesVaccine PotencyViral ProteinsAntigens, Viralhemagglutinin, avian influenza A virusHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesNA protein, influenza A virusNeuraminidaseViral Proteins

Identifiers

PMID28158271
PMCPMC5291408
OpenAlexW2584970497

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.