Evidence map›Paper›PMID 28158215›Full record

ArticlePloS one2017

In silico analyses and global transcriptional profiling reveal novel putative targets for Pea3 transcription factor related to its function in neurons.

Başak Kandemir, Ugur Dag, Burcu Bakir Gungor, İlknur Melis Durasi, Burcu Erdogan, Eray Sahin, Ugur Sezerman, Isil Aksan Kurnaz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Expression of Genes Involved in Axon Guidance: How Much Have We Learned?International journal of molecular sciences · 2020
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Başak KandemirGebze Technical University, Department of Molecular Biology and Genetics, Kocaeli, Turkey.
Ugur DagYeditepe University, Biotechnology Graduate Program, Kayisdagi, Istanbul, Turkey.
Burcu Bakir GungorSabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey.
İlknur Melis DurasiGebze Technical University, Department of Molecular Biology and Genetics, Kocaeli, Turkey.
Burcu ErdoganYeditepe University, Biotechnology Graduate Program, Kayisdagi, Istanbul, Turkey.
Eray SahinGebze Technical University, Department of Molecular Biology and Genetics, Kocaeli, Turkey.
Ugur SezermanSabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey.
Isil Aksan KurnazGebze Technical University, Department of Molecular Biology and Genetics, Kocaeli, Turkey.ORCID http://orcid.org/0000-0002-5587-4763
Yeditepe University · TRGebze Technical University · TRSabancı Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pea3 transcription factor belongs to the PEA3 subfamily within the ETS domain transcription factor superfamily, and has been largely studied in relation to its role in breast cancer metastasis. Nonetheless, Pea3 plays a role not only in breast tumor, but also in other tissues with branching morphogenesis, including kidneys, blood vasculature, bronchi and the developing nervous system. Identification of Pea3 target promoters in these systems are important for a thorough understanding of how Pea3 functions. Present study particularly focuses on the identification of novel neuronal targets of Pea3 in a combinatorial approach, through curation, computational analysis and microarray studies in a neuronal model system, SH-SY5Y neuroblastoma cells. We not only show that quite a number of genes in cancer, immune system and cell cycle pathways, among many others, are either up- or down-regulated by Pea3, but also identify novel targets including ephrins and ephrin receptors, semaphorins, cell adhesion molecules, as well as metalloproteases such as kallikreins, to be among potential target promoters in neuronal systems. Our overall results indicate that rather than early stages of neurite extension and axonal guidance, Pea3 is more involved in target identification and synaptic maturation.

Indexed as

Cell DifferentiationCell Line, TumorChromatin ImmunoprecipitationEndocytosisHumansNeuronsReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionTranscription Factorstranscription factor PEA3Transcription Factors

Identifiers

PMID28158215
PMCPMC5291419
OpenAlexW2585129241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.