Evidence map›Paper›PMID 28157189›Full record

ArticleBlood cancer journal2017

Identification of cell-type-specific mutations in nodal T-cell lymphomas.

T B Nguyen, M Sakata-Yanagimoto, Y Asabe, D Matsubara, J Kano, K Yoshida, Y Shiraishi, K Chiba, H Tanaka, S Miyano and 9 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 88 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Clones in blood and stratified epithelial cells, and their drivers.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  16. Review
  17. Analysis of Notch1 protein expression in methotrexate-associated lymphoproliferative disorders.Journal of clinical and experimental hematopathology : JCEH · 2024
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 2 countries.

T B NguyenDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
M Sakata-YanagimotoDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Y AsabeDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
D MatsubaraDepartment of Integrative Pathology, Jichii Medical University, Shimotsuke, Tochigi, Japan.
J KanoDepartment of Pathology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
K YoshidaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Y ShiraishiHuman Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
K ChibaHuman Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
H TanakaHuman Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
S MiyanoHuman Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
K IzutsuDepartment of Hematology, Toranomon Hospital, Tokyo, Japan.
N NakamuraDepartment of Pathology, Tokai University School of Medicine, Isehara, Kanagawa, Japan.
K TakeuchiPathology Project for Molecular Targets, The Cancer Institute, Japanese Foundation for Cancer Research, Tokyo, Japan.ORCID 0000-0002-1599-5800
H MiyoshiDepartment of Pathology, Kurume University, Kurume, Fukuoka, Japan.
K OhshimaDepartment of Pathology, Kurume University, Kurume, Fukuoka, Japan.
T MinowaNanotechnology Innovation Station, National Institute for Materials Science, Tsukuba, Ibaraki, Japan.
S OgawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
M NoguchiDepartment of Pathology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
S ChibaDepartment of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
University of Tsukuba · JPKurume University · JPKyoto University · JPJapanese Foundation For Cancer Research · JPJichi Medical University · JPNational Institute for Materials Science · JPTokai University · JPToranomon Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent genetic analysis has identified frequent mutations in ten-eleven translocation 2 (TET2), DNA methyltransferase 3A (DNMT3A), isocitrate dehydrogenase 2 (IDH2) and ras homolog family member A (RHOA) in nodal T-cell lymphomas, including angioimmunoblastic T-cell lymphoma and peripheral T-cell lymphoma, not otherwise specified. We examined the distribution of mutations in these subtypes of mature T-/natural killer cell neoplasms to determine their clonal architecture. Targeted sequencing was performed for 71 genes in tumor-derived DNA of 87 cases. The mutations were then analyzed in a programmed death-1 (PD1)-positive population enriched with tumor cells and CD20-positive B cells purified by laser microdissection from 19 cases. TET2 and DNMT3A mutations were identified in both the PD1+ cells and the CD20+ cells in 15/16 and 4/7 cases, respectively. All the RHOA and IDH2 mutations were confined to the PD1+ cells, indicating that some, including RHOA and IDH2 mutations, being specific events in tumor cells. Notably, we found that all NOTCH1 mutations were detected only in the CD20+ cells. In conclusion, we identified both B- as well as T-cell-specific mutations, and mutations common to both T and B cells. These findings indicate the expansion of a clone after multistep and multilineal acquisition of gene mutations.

Indexed as

Biomarkers, TumorMutationAllelesAmino Acid SubstitutionB-LymphocytesDNA Methyltransferase 3AGene Rearrangement, T-LymphocyteGenetic Predisposition to DiseaseHumansImmunoglobulin Heavy ChainsImmunohistochemistryImmunophenotypingLymphoma, Extranodal NK-T-CellOrgan SpecificityPhenotyperhoA GTP-Binding ProteinBiomarkers, TumorDNA Methyltransferase 3ADNMT3A protein, humanImmunoglobulin Heavy ChainsrhoA GTP-Binding Protein

Identifiers

PMID28157189
PMCPMC5301031
OpenAlexW2573926257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.