Evidence map›Paper›PMID 28154131›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

A pathway of targeted autophagy is induced by DNA damage in budding yeast.

Vinay V Eapen, David P Waterman, Amélie Bernard, Nathan Schiffmann, Enrich Sayas, Roarke Kamber, Brenda Lemos, Gonen Memisoglu, Jessie Ang, Allison Mazella and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Autophagy · 2026
    Article
  3. Article
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  7. Mec1-mediated Atg9 phosphorylation regulates the PAS recruitment of Atg9 vesicles upon energy stress.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
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  10. Article
  11. Article
  12. CryptoCEN: A Co-Expression Network forbioRxiv : the preprint server for biology · 2023
    Article
  13. Review
  14. Mec1 regulates PAS recruitment of Atg13 via direct binding with Atg13 during glucose starvation-induced autophagy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Vinay V EapenDepartment of Biology, Brandeis University, Waltham, MA 02454.
David P WatermanDepartment of Biology, Brandeis University, Waltham, MA 02454.
Amélie BernardLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Nathan SchiffmannDepartment of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.
Enrich SayasDepartment of Molecular Biology, University of Geneva, CH-1211 Geneva 4, Switzerland.
Roarke KamberMolecular and Cell Biology, Harvard University, Cambridge, MA 02138.
Brenda LemosDepartment of Biology, Brandeis University, Waltham, MA 02454.
Gonen MemisogluDepartment of Biology, Brandeis University, Waltham, MA 02454.
Jessie AngDepartment of Biology, Brandeis University, Waltham, MA 02454.
Allison MazellaDepartment of Biology, Brandeis University, Waltham, MA 02454.
Silvia G ChuartzmanDepartment of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.
Robbie J LoewithDepartment of Molecular Biology, University of Geneva, CH-1211 Geneva 4, Switzerland.
Maya SchuldinerDepartment of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.
Vladimir DenicMolecular and Cell Biology, Harvard University, Cambridge, MA 02138.
Daniel J KlionskyLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
James E HaberDepartment of Biology, Brandeis University, Waltham, MA 02454; haber@brandeis.edu.

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
GENETIC AND BIOCHEMICAL MECHANISMS OF REGULATIONT32GM007122 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 1985 to 2020
$7.5M
Recombination Mechanisms in Yeast Cell DifferentiationR37GM020056 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 2007 to 2016
$5.5M
Arrest, Recovery, and Adaptation from DNA DamageR01GM061766 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 2001 to 2016
$4.6M
RECOMBINATION MECHANISMS IN YEAST CELL DIFFERENTIATIONR01GM020056 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 1985 to 2006
$3.4M
Uncovering kinase cascade mechanisms that target organelles for destruction by selective autophagyR01GM121419 · NIGMS · HARVARD UNIVERSITY · PI DENIC, VLADIMIR · 2017 to 2018
$657k
NIGMS NIH HHS R01 GM020056NIGMS NIH HHS R01 GM053396NIGMS NIH HHS R01 GM061766NIGMS NIH HHS R01 GM121419NIGMS NIH HHS R37 GM020056NIGMS NIH HHS T32 GM007122
6 · The paper itself

Abstract

Autophagy plays a central role in the DNA damage response (DDR) by controlling the levels of various DNA repair and checkpoint proteins; however, how the DDR communicates with the autophagy pathway remains unknown. Using budding yeast, we demonstrate that global genotoxic damage or even a single unrepaired double-strand break (DSB) initiates a previously undescribed and selective pathway of autophagy that we term genotoxin-induced targeted autophagy (GTA). GTA requires the action primarily of Mec1/ATR and Rad53/CHEK2 checkpoint kinases, in part via transcriptional up-regulation of central autophagy proteins. GTA is distinct from starvation-induced autophagy. GTA requires Atg11, a central component of the selective autophagy machinery, but is different from previously described autophagy pathways. By screening a collection of ∼6,000 yeast mutants, we identified genes that control GTA but do not significantly affect rapamycin-induced autophagy. Overall, our findings establish a pathway of autophagy specific to the DNA damage response.

Indexed as

DNA Breaks, Double-StrandedDNA DamageAutophagyAutophagy-Related ProteinsCell Cycle ProteinsCheckpoint Kinase 2DNA, FungalDNA RepairIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionVesicular Transport ProteinsAtg11 protein, S cerevisiaeAutophagy-Related ProteinsCell Cycle ProteinsCheckpoint Kinase 2DNA, FungalIntracellular Signaling Peptides and ProteinsMEC1 protein, S cerevisiaeProtein Serine-Threonine KinasesRAD53 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsATM kinaseATR kinaseautophagybudding yeastDNA damage

Identifiers

PMID28154131
PMCPMC5320992

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.