Evidence map›Paper›PMID 28153034›Full record

ArticleMolecular neurodegeneration2017

Tdp-43 cryptic exons are highly variable between cell types.

Yun Ha Jeong, Jonathan P Ling, Sophie Z Lin, Aneesh N Donde, Kerstin E Braunstein, Elisa Majounie, Bryan J Traynor, Katherine D LaClair, Thomas E Lloyd, Philip C Wong

Open access · goldAbstract read
In one paragraph

Article in Molecular neurodegeneration, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 126 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. TDP-43: [GU]-ardian of the transcriptome.Molecular neurodegeneration · 2026
    Review
  8. Aberrant Splicing Signatures Underpin Oligodendrocyte Damage in ALS and Neuron Loss in FTD.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. TDP-43 controls RNA structure through high affinity lattice interactions.bioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Yun Ha JeongDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Jonathan P LingDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Sophie Z LinDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Aneesh N DondeDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Kerstin E BraunsteinDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Elisa MajounieLaboratory of Neurogenetics, NIA, NIH, Bethesda, MD, 20892, USA.
Bryan J TraynorDepartments of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Katherine D LaClairDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Thomas E LloydDepartments of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Philip C WongDepartments of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA. wong@jhmi.edu.
Johns Hopkins Medicine · USJohns Hopkins University · USNational Institutes of Health · US

Funding

'T V ASSESSMENT - MEMORY DISORDERED PATIENTS'P50AG005146 · NIA · JOHNS HOPKINS UNIVERSITY · PI HUGANIR, RICHARD L · 1985 to 2019
$37.6M
Training Program in Cellular and Molecular MedicineT32GM008752 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 2000 to 2019
$11.7M
Murine Mutagenesis CoreP30NS050274 · NINDS · JOHNS HOPKINS UNIVERSITY · PI KOLODKIN, ALEX L · 2005 to 2020
$10.9M
TDP-43 Proteinopathy in ALS-FTD: Mechanism, Target Validation and BiomarkerR01NS095969 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PHILIP C WONG · 2016 to 2026
$2.4M
Dynactin function in axons, synapses, and neurodegenerative diseaseR01NS082563 · NINDS · JOHNS HOPKINS UNIVERSITY · PI LLOYD, THOMAS E. · 2013 to 2017
$1.8M
NIA NIH HHS P50 AG005146NIGMS NIH HHS T32 GM008752NINDS NIH HHS P30 NS050274NINDS NIH HHS R01 NS082563NINDS NIH HHS R01 NS095969
6 · The paper itself

Abstract

backgroundTDP-43 proteinopathy is a prominent pathological feature that occurs in a number of human diseases including amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), and inclusion body myositis (IBM). Our recent finding that TDP-43 represses nonconserved cryptic exons led us to ask whether cell type-specific cryptic exons could exist to impact unique molecular pathways in brain or muscle.

methodsIn the present work, we investigated TDP-43's function in various mouse tissues to model disease pathogenesis. We generated mice to conditionally delete TDP-43 in excitatory neurons or skeletal myocytes and identified the cell type-specific cryptic exons associated with TDP-43 loss of function.

resultsComparative analysis of nonconserved cryptic exons in various mouse cell types revealed that only some cryptic exons were common amongst stem cells, neurons, and myocytes; the majority of these nonconserved cryptic exons were cell type-specific.

conclusionsOur results suggest that in human disease, TDP-43 loss of function may impair cell type-specific pathways.

Indexed as

AnimalsDisease Models, AnimalDNA-Binding ProteinsExonsImmunoblottingImmunohistochemistryMiceMice, KnockoutMice, TransgenicMuscle CellsMuscle Fibers, SkeletalNeuronsReverse Transcriptase Polymerase Chain ReactionTDP-43 ProteinopathiesDNA-Binding ProteinsTardbp protein, mouseAmyotrophic lateral sclerosisBioinformaticsFrontotemporal dementiaInclusion body myositisTDP-43 –Nonconserved cryptic exons

Identifiers

PMID28153034
PMCPMC5289002
OpenAlexW2585537956

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.