Evidence map›Paper›PMID 28152560›Full record

ArticleEnvironmental microbiology2017

Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes.

Luke R Thompson, Kiel Nikolakakis, Shu Pan, Jennifer Reed, Rob Knight, Edward G Ruby

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. The type-VI secretion system of the beneficial symbiontMicrobiology (Reading, England) · 2023
    Review
  3. Review
  4. Nocturnal Acidification: A Coordinating Cue in theInternational journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Luke R ThompsonDepartment of Pediatrics, University of California, San Diego, CA, USA.
Kiel NikolakakisDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI, USA.
Shu PanDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI, USA.
Jennifer ReedDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI, USA.
Rob KnightDepartment of Pediatrics, University of California, San Diego, CA, USA.
Edward G RubyDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI, USA.
University of Wisconsin–Madison · USUniversity of California, San Diego · US

Funding

Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
Chemotactic Cues in the Symbiosis Between Vibrio fischeri and Euprymna scolopesF32GM112214 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI NIKOLAKAKIS, KIEL · 2014 to 2016
$112k
NIGMS NIH HHS F32 GM112214NIH HHS R01 OD011024
6 · The paper itself

Abstract

The marine bacterium Vibrio fischeri is the monospecific symbiont of the Hawaiian bobtail squid, Euprymna scolopes, and the establishment of this association involves a number of signaling pathways and transcriptional responses between both partners. We report here the first full RNA-Seq dataset representing host-associated V. fischeri cells from colonized juvenile E. scolopes, as well as comparative transcriptomes under both laboratory and simulated marine planktonic conditions. These data elucidate the broad transcriptional changes that these bacteria undergo during the early stages of symbiotic colonization. We report several previously undescribed and unexpected transcriptional responses within the early stages of this symbiosis, including gene expression patterns consistent with biochemical stresses inside the host, and metabolic patterns distinct from those reported in associations with adult animals. Integration of these transcriptional data with a recently developed metabolic model of V. fischeri provides us with a clearer picture of the metabolic state of symbionts within the juvenile host, including their possible carbon sources. Taken together, these results expand our understanding of the early stages of the squid-vibrio symbiosis, and more generally inform the transcriptional responses underlying the activities of marine microbes during host colonization.

Indexed as

Aliivibrio fischeriAnimalsDecapodiformesEnergy MetabolismRNA, BacterialSignal TransductionSymbiosisTranscriptomeRNA, Bacterial

Identifiers

PMID28152560
PMCPMC5409853
OpenAlexW2586034027

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.