ArticlePloS one2017
A Genome-Wide Association Study for Agronomic Traits in Soybean Using SNP Markers and SNP-Based Haplotype Analysis.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.
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Who cites it
76 citing papers in PubMed.
- Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut.Scientific reports · 2026Article
- Genome-wide signatures of selection and genetic diversity reveal the impact of modern breeding on Brazilian soybean.Molecular breeding : new strategies in plant improvement · 2026Article
- A haplotype-layered GWAS identifies a multi-trait grain mold resistance hub on sorghum chromosome 5.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Exploring the potential of naked barley to manage deoxynivalenol accumulation from Fusarium head blight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Integrative haplotype and SNP-based GWAS supports the identification of stable genomic loci controlling yield-related traits in soybean.Frontiers in plant science · 2026Article
- Population structure, genetic diversity and genome-wide association analysis of the seed morphology traits in Handroanthus chrysanthus (Jacq.) s.o.grose.BMC plant biology · 2025Article
- Using Structural Equation Models to Interpret Genome-Wide Association Studies for Morphological and Productive Traits in Soybean [Plants (Basel, Switzerland) · 2025Article
- Identification of new genomic loci for seed protein and oil content in the soybean pangenome using genome-wide association and haplotype analyses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Mining genetic loci and candidate genes related to salt tolerance traits in soybean.Scientific reports · 2025Article
- Genome-wide association study and fine-mapping identify a major quantitative trait locus controlling hundred-seed weight in soybean.Frontiers in plant science · 2025Article
- Identification of transcription factor BnHDG4-A08 as a novel candidate associated with the accumulation of oleic, linoleic, linolenic, and erucic acid in Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Insights into maydis leaf blight resistance in maize: a comprehensive genome-wide association study in sub-tropics of India.BMC genomics · 2024Article
- QTL mapping and genomic selection of stem and branch diameter in soybean (Frontiers in plant science · 2024Article
- Article
- The Genotypic Variability among Short-Season Soybean Cultivars for Nitrogen Fixation under Drought Stress.Plants (Basel, Switzerland) · 2023Article
- Genome-wide association studies for phenological and agronomic traits in mungbean (Frontiers in plant science · 2023Article
- Genome-wide association study of agronomical and root-related traits in spring barley collection grown under field conditions.Frontiers in plant science · 2023Article
- Genome-wide association study of soybean (Frontiers in plant science · 2023Article
- Genome-wide association study as a powerful tool for dissecting competitive traits in legumes.Frontiers in plant science · 2023Review
- Molecular, genetic, and genomic basis of seed size and yield characteristics in soybean.Frontiers in plant science · 2023Review
16 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
Mapping quantitative trait loci through the use of linkage disequilibrium (LD) in populations of unrelated individuals provides a valuable approach for dissecting the genetic basis of complex traits in soybean (Glycine max). The haplotype-based genome-wide association study (GWAS) has now been proposed as a complementary approach to intensify benefits from LD, which enable to assess the genetic determinants of agronomic traits. In this study a GWAS was undertaken to identify genomic regions that control 100-seed weight (SW), plant height (PH) and seed yield (SY) in a soybean association mapping panel using single nucleotide polymorphism (SNP) markers and haplotype information. The soybean cultivars (N = 169) were field-evaluated across four locations of southern Brazil. The genome-wide haplotype association analysis (941 haplotypes) identified eleven, seventeen and fifty-nine SNP-based haplotypes significantly associated with SY, SW and PH, respectively. Although most marker-trait associations were environment and trait specific, stable haplotype associations were identified for SY and SW across environments (i.e., haplotypes Gm12_Hap12). The haplotype block 42 on Chr19 (Gm19_Hap42) was confirmed to be associated with PH in two environments. These findings enable us to refine the breeding strategy for tropical soybean, which confirm that haplotype-based GWAS can provide new insights on the genetic determinants that are not captured by the single-marker approach.
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