ArticleScientific reports2017
De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
- Microsporogenesis and Pollen Morphology of Triploid and Tetraploid Rubber Trees (Plants (Basel, Switzerland) · 2026Article
- First Report ofPlants (Basel, Switzerland) · 2026Article
- The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal genetic responses to tapping in rubber tree.Nature communications · 2025Article
- Phenotypic and transcriptomic analysis reveals key genes associated with plant height in rubber tree and functional characterization of the candidate gene HbFLA11.The plant genome · 2025Article
- Evolutionary signatures of the erosion of sexual reproduction genes in domesticated cassava (Manihot esculenta).G3 (Bethesda, Md.) · 2025Article
- Comparative genomics and multiomics analyses reveal the evolution and physiological basis of rubber biosynthesis in Hevea species.GigaScience · 2025Article
- Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution.Nature communications · 2024Article
- Plant Biotechnology-An Indispensable Tool for Crop Improvement.Plants (Basel, Switzerland) · 2024Article
- Heterozygosity analysis of spontaneous 2n female gametes and centromere mapping of the diploid Hevea brasiliensis based on full-sib triploid populations.Plant reproduction · 2024Article
- Advances in Genome Sequencing and Natural Rubber Biosynthesis in Rubber-Producing Plants.Current issues in molecular biology · 2023Review
- Genomic insight into domestication of rubber tree.Nature communications · 2023Article
- Chromosome-level wild Hevea brasiliensis genome provides new tools for genomic-assisted breeding and valuable loci to elevate rubber yield.Plant biotechnology journal · 2023Article
- The rubber tree kinome: Genome-wide characterization and insights into coexpression patterns associated with abiotic stress responses.Frontiers in plant science · 2023Article
- Analysis of Genetic Diversity and Resistance to Foliar Pathogens Based on Genotyping-by-Sequencing of a Para Rubber Diversity Panel and Progeny of an Interspecific Cross.Plants (Basel, Switzerland) · 2022Article
- Development of Novel Markers for Yield in Hevea brasiliensis Muell. Arg. Based on Candidate Genes from Biosynthetic Pathways Associated with Latex Production.Biochemical genetics · 2022Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
- Identification of Candidate Gene-Based Markers for Girth Growth in Rubber Trees.Plants (Basel, Switzerland) · 2021Article
- Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes ofFrontiers in microbiology · 2021Article
- Unravelling Rubber Tree Growth by Integrating GWAS and Biological Network-Based Approaches.Frontiers in plant science · 2021Article
- Reference gene validation in Eotetranychus sexmaculatus (Acari: Tetranychidae) feeding on mite-susceptible and mite-resistant rubber tree germplasms.Experimental & applied acarology · 2020Article
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10 authors.
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Abstract
Para rubber tree (Hevea brasiliensis) is an important economic species as it is the sole commercial producer of high-quality natural rubber. Here, we report a de novo hybrid assembly of BPM24 accession, which exhibits resistance to major fungal pathogens in Southeast Asia. Deep-coverage 454/Illumina short-read and Pacific Biosciences (PacBio) long-read sequence data were acquired to generate a preliminary draft, which was subsequently scaffolded using a long-range "Chicago" technique to obtain a final assembly of 1.26 Gb (N50 = 96.8 kb). The assembled genome contains 69.2% repetitive sequences and has a GC content of 34.31%. Using a high-density SNP-based genetic map, we were able to anchor 28.9% of the genome assembly (363 Mb) associated with over two thirds of the predicted protein-coding genes into rubber tree's 18 linkage groups. These genetically anchored sequences allowed comparative analyses of the intragenomic homeologous synteny, providing the first concrete evidence to demonstrate the presence of paleotetraploidy in Hevea species. Additionally, the degree of macrosynteny conservation observed between rubber tree and cassava strongly supports the hypothesis that the paleotetraploidization event took place prior to the divergence of the Hevea and Manihot species.
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