Evidence map›Paper›PMID 28149041›Full record

ArticleBioinformation2016

Structural basis for the in vitro known acyl-depsipeptide 2 (ADEP2) inhibition to Clp 2 protease from Mycobacterium tuberculosis.

Natasha Khandekar, Snehal Singh, Ruchi Shukla, Sridevi Tirumalaraju, Srinivas Bandaru, Tushar Banerjee, Anuraj Nayarisseri

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Natasha KhandekarSchool of Life Science, Devi Ahilya University, Khandwa Road, Indore - 452 001, Madhya Pradesh, India.; Bioinformatics Research Laboratory, Eminent Biosciences, Vijaynagar, Indore - 452010, India.
Snehal SinghBioinformatics Research Laboratory, Eminent Biosciences, Vijaynagar, Indore - 452010, India.
Ruchi ShuklaBioinformatics Research Laboratory, Eminent Biosciences, Vijaynagar, Indore - 452010, India.
Sridevi TirumalarajuMahatma Gandhi National Institute of Research & Social Action,Hyderabad - 500029, India.
Srinivas BandaruInstitute of Genetics and Hospital for Genetic Diseases, Osmania University, Hyderabad - 500 016, India.
Tushar BanerjeeSchool of Life Science, Devi Ahilya University, Khandwa Road, Indore - 452 001, Madhya Pradesh, India.
Anuraj NayarisseriBioinformatics Research Laboratory, Eminent Biosciences, Vijaynagar, Indore - 452010, India.
In Silico Biosciences (United States) · USDevi Ahilya Vishwavidyalaya · INInstitute of Genetics and Hospital for Genetic Diseases · INSocial Action · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inhibition of Mycobacterium tuberculosis Clp 2 protease has emerged as an attractive therapeutic option for treatment. Acyldepsipeptides (ADEPs) is known as an inhibitor for Clp 2 protease. Therefore, it is of interest to document its affinity, enzyme activity and ADME profiles. We report the predicted binding affinity of all known Clp 2 inhibitors like IDR-10001 and IDR-10011 against Clp2 protease using MolDock algorithm aided molecular docking. The predicted activity (using Molinspiration server) and ADMET properties (AdmetSAR server) were estimated for these compounds. This data suggest ADEP2 having improved binding features with Mtb Clp 2 having acceptable ADMET properties. This is in agreement with known in vitro data for ADEP2 inhibition with Mtb Clp 2 protease.

Indexed as

ADEPsClp 2 proteasemolecular dockingMycobacterium tuberculosispharmacological profiling

Identifiers

PMID28149041
PMCPMC5267950
OpenAlexW2495421131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.