Evidence map›Paper›PMID 28148824›Full record

ArticleRNA (New York, N.Y.)2017

Biochemical and genetic functional dissection of the P38 viral suppressor of RNA silencing.

Taichiro Iki, Marie-Aude Tschopp, Olivier Voinnet

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
7.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 33 citations in OpenAlex.

  1. Viruses · 2023
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Cell-free reconstitution reveals the molecular mechanisms for the initiation of secondary siRNA biogenesis in plants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Article
  8. Biodesign research · 2020
    Review
  9. Review
  10. A complex ofRNA (New York, N.Y.) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Taichiro IkiDepartment of Biology, Swiss Federal Institute of Technology (ETH), 8092 Zürich, Switzerland.
Marie-Aude TschoppDepartment of Biology, Swiss Federal Institute of Technology (ETH), 8092 Zürich, Switzerland.
Olivier VoinnetDepartment of Biology, Swiss Federal Institute of Technology (ETH), 8092 Zürich, Switzerland.
École Polytechnique Fédérale de Lausanne · CH

Funding

European Research Council 323071
6 · The paper itself

Abstract

Phytoviruses encode viral suppressors of RNA silencing (VSRs) to counteract the plant antiviral silencing response, which relies on virus-derived small interfering (si)RNAs processed by Dicer RNaseIII enzymes and subsequently loaded into ARGONAUTE (AGO) effector proteins. Here, a tobacco cell-free system was engineered to recapitulate the key steps of antiviral RNA silencing and, in particular, the most upstream double-stranded (ds)RNA processing reaction, not kinetically investigated thus far in the context of plant VSR studies. Comparative biochemical analyses of distinct VSRs in the reconstituted assay showed that in all cases tested, VSR interactions with siRNA duplexes inhibited the loading, but not the activity, of antiviral AGO1 and AGO2. Turnip crinkle virus P38 displayed the additional and unique property to bind both synthetic and RNA-dependent-RNA-polymerase-generated long dsRNAs, and inhibited the processing into siRNAs. Single amino acid substitutions in P38 could dissociate dsRNA-processing from AGO-loading inhibition in vitro and in vivo, illustrating dual-inhibitory strategies discriminatively deployed within a single viral protein, which, we further show, are bona fide suppressor functions that evolved independently of the conserved coat protein function of P38.

Indexed as

RNA InterferenceArgonaute ProteinsCarmovirusNicotianaPlant ProteinsPoint MutationRNA-Binding ProteinsRNA, Double-StrandedRNA-Induced Silencing ComplexRNA Processing, Post-TranscriptionalRNA, Small InterferingViral ProteinsArgonaute ProteinsPlant ProteinsRNA-Binding ProteinsRNA, Double-StrandedRNA-Induced Silencing ComplexRNA, Small InterferingViral ProteinsARGONAUTE (AGO)Dicer-like (DCL)Nicotiana tabacum BY-2 cell lysate (BYL)P38Turnip crinkle virus (TCV)viral suppressor of RNA silencing (VSR)

Identifiers

PMID28148824
PMCPMC5393175
OpenAlexW2585043779

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.